MarvinSketch Applet Examples

1. Basic examples
   1. Embedding MarvinSketch applet in HTML pages
      The basic ways of creating Marvin Applets and embedding them in HTML pages.
   2. Setting canvas colors
      The color of the canvas can optionally be modified by applet parameters.
   3. Specify a custom splash screen image
      Specify a custom splash screen image to the MarvinSketch Applet.
   4. Show all implicit Hydrogen atoms
      How to remove explicit hydrogen atoms and show all implicit hydrogen atoms in applets.
   5. Structure templates
      Handling of custom and built-in template groups.
   6. Abbreviated groups
      Replacing the built-in abbreviated group collection with a cutom one.
   7. GUI customization
      The Graphical User Interface is customized to use the ISIS/Draw-like configuration.
2. Query atoms, extra bond types, disabling elements
   Controlling the type of atoms and bonds to be used in the applet.
3. Visualization, loading molecules
   1. Loading a molecule in visualization mode, using magnification
      Starting the applet in visualization (view only) mode i.e. the editing buttons cannot be seen.
   2. Working with inline, compressed molfiles
      Inline, compressed molfiles can decrease the download time of applets.
   3. Triggering molfile download from JavaScript, naming the applet
      Loading a molecule by pressing a HTML button.
   4. Import/export of built-in and user defined molecule formats in JavaScript
      Introducing molecule import/export with JavaScript using several molecular formats and HTML buttons.
   5. Pure visualization mode I
      Opening/closing MarvinSketch window by clicking on the image of the molecule.
   6. Pure visualization mode II
      Starting with a detached MarvinSketch window.
   7. Visualizing 3D structures
      How to convert the input structure to 3D.
4. Molecular property calculations
   1. Molecular property calculations with Chemical Terms
      Formulating chemical expressions with JavaScript.
   2. Calculating molecular properties on the fly
      Every time the molecule is altered, the Chemical Terms expressions are re-evaluated and the results are updated.
5. Examples for browsers without Java - JavaScript communication
   1. Retrieving a structure
      Sending a structure from MarvinSketch to MarvinView for browsers without LiveConnect support.
   2. Import/export of structures
      Import/export of structures for browsers without LiveConnect support.
6. Case studies - composite real-life examples
   1. Student examination
      Student examination example for lone pair and radical electron settings having all helper options disabled.
   2. Molecule transfer
      Editing the structures of a molecule table with MarvinSketch

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