Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1ZUY-9.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8
poly-Ala
A
 A
A
 A A
A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.914 ΔGbinding 0.426
TOTAL
 1.340
Backbone Hb -2.162 Cis_bond 0.000
Sidechain Hb -2.163 Torsional clash 1.135
Van der Waals -3.903 Backbone clash 2.782
Electrostatics 0.142 Helix dipole 0.000
Solvation Polar 4.532 Water bridges -0.000
Solvation Hyd -4.914 Disulfide 0.000
VdW clashes 2.022 Electrost. Kon 0.192
Entropy sc 0.926 Part.cov.bonds 0.000
Entropy mc

4.619

 ΔGstability

7.414
       

Predicted ligand sequences for model [MYO5_1ZUY-9.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1ZUY-9.PDB  

(data)
# Predicted Sequences Value Calculate
1 RKWIPPWS 0.0
2 RKPIPPWS 0.02
3 YKWIPPWS 0.02
4 RKFIPPWS 0.03
5 RLWIPPWS 0.04
6 YKPIPPWS 0.04
7 YKFIPPWS 0.05
8 RLPIPPWS 0.06
9 YLWIPPWS 0.07
10 RLFIPPWS 0.07
11 YLPIPPWS 0.09
12 YLFIPPWS 0.1
13 RRWIPPWS 0.14
14 RKWIWPWS 0.15
15 RRPIPPWS 0.16
16 YKWIWPWS 0.17
17 RKPIWPWS 0.17
18 RRFIPPWS 0.17
19 YRWIPPWS 0.17
20 YRPIPPWS 0.18
21 RKFIWPWS 0.18
22 RKWIPMWS 0.18
23 YKPIWPWS 0.19
24 RLWIWPWS 0.19
25 RKWIPDWS 0.2
26 YRFIPPWS 0.2
27 RKPIPMWS 0.2
28 YKFIWPWS 0.2
29 RLPIWPWS 0.21
30 RKPIPDWS 0.21
31 RKFIPMWS 0.21
32 YKWIPMWS 0.21
33 YLWIWPWS 0.21
34 YKWIPDWS 0.22
35 RLFIWPWS 0.22
36 YKPIPMWS 0.22
37 RKFIPDWS 0.23
38 RLWIPMWS 0.23
39 YLPIWPWS 0.23
40 RLWIPDWS 0.24
41 YKPIPDWS 0.24
42 YKFIPMWS 0.24
43 RLPIPMWS 0.24
44 YLFIWPWS 0.24
45 RKWMPPWS 0.24
46 YKFIPDWS 0.25
47 YLWIPMWS 0.25
48 RLPIPDWS 0.26
49 YKWMPPWS 0.26
50 RKPMPPWS 0.26
51 RLFIPMWS 0.26
52 YLWIPDWS 0.26
53 RKFMPPWS 0.27
54 RLFIPDWS 0.27
55 YLPIPMWS 0.27
56 RLWMPPWS 0.28
57 YLFIPMWS 0.28
58 YLPIPDWS 0.28
59 YKPMPPWS 0.28
60 YKFMPPWS 0.29
61 YLFIPDWS 0.29
62 RRWIWPWS 0.29
63 RLPMPPWS 0.3
64 YLWMPPWS 0.3
65 RLFMPPWS 0.31
66 YRWIWPWS 0.31
67 RRPIWPWS 0.31
68 RRFIWPWS 0.32
69 RKWIPPWF 0.32
70 YLPMPPWS 0.32
71 RRWIPMWS 0.32
72 RKWIWMWS 0.33
73 YRPIWPWS 0.33
74 YLFMPPWS 0.33
75 RKWIWDWS 0.34
76 YRFIWPWS 0.34
77 RKPIPPWF 0.34
78 RRPIPMWS 0.34
79 RRWIPDWS 0.34
80 YKWIWMWS 0.35
81 RKPIWMWS 0.35
82 YRWIPMWS 0.35
83 RKFIPPWF 0.35
84 RRPIPDWS 0.35
85 YKWIPPWF 0.35
86 RKWIPPWL 0.35
87 RRFIPMWS 0.35
88 RKFIWMWS 0.36
89 YRWIPDWS 0.36
90 RKPIWDWS 0.36
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 RKFIPPWS

2.34

-9.99

-7.65
2 RRFIPPWS

2.48

-10.02

-7.54
3 RKFIWPWS

2.08

-9.36

-7.28
4 YLFIPPWS

2.32

-9.5

-7.18
5 YKPIPPWS

2.15

-9.25

-7.1
6 YKPIWPWS

2.01

-8.81

-6.8
7 YLPIPPWS

2.33

-9.07

-6.74
8 RKPIPDWS

2.78

-9.43

-6.65
9 RLWIPPWS

2.23

-8.78

-6.55
10 RLPIWPWS

2.29

-8.81

-6.52
11 RLFIPPWS

2.9

-9.4

-6.5
12 YRWIPPWS

2.79

-9.25

-6.46
13 RKPIWPWS

1.92

-8.36

-6.44
14 YKWIPPWS

2.49

-8.87

-6.38
15 YKFIPPWS

2.68

-9.05

-6.37
16 YLWIPPWS

2.86

-9.19

-6.33
17 YRFIPPWS

2.61

-8.8

-6.19
18 YRPIPPWS

2.67

-8.81

-6.14
19 RKPIPPWS

2.62

-8.76

-6.14
20 RKWIPDWS

2.36

-8.35

-5.99
21 RLPIPPWS

2.97

-8.75

-5.78
22 RRPIPPWS

2.83

-8.6

-5.77
23 RLWIWPWS

2.45

-8.2

-5.75
24 RKPIPMWS

2.53

-8.23

-5.7
25 RKWIPMWS

2.62

-8.24

-5.62
26 RRWIPPWS

2.41

-7.91

-5.5
27 RKWIPPWS

2.66

-8.16

-5.5
28 YKWIWPWS

2.33

-7.66

-5.33
29 RKWIWPWS

2.27

-7.28

-5.01
30 YKFIWPWS

3.75

-7.56

-3.81

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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