Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1ZUY-4.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala A
A
 A
A
 A
A
A
 A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 1.094 ΔGbinding -1.877
TOTAL
 -0.783
Backbone Hb 0.000 Cis_bond 0.000
Sidechain Hb -0.000 Torsional clash 0.776
Van der Waals -4.574 Backbone clash 0.009
Electrostatics -0.262 Helix dipole 0.000
Solvation Polar 4.820 Water bridges 0.086
Solvation Hyd -6.470 Disulfide 0.000
VdW clashes 0.727 Electrost. Kon -0.336
Entropy sc 0.743 Part.cov.bonds 0.000
Entropy mc

2.613

 ΔGstability

4.053
       

Predicted ligand sequences for model [MYO5_1ZUY-4.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1ZUY-4.PDB  

(data)
# Predicted Sequences Value Calculate
1 HKPRRFRDRW 0.0
2 FKPRRFRDRW 0.07
3 HKPRRFRERW 0.11
4 HKPRKFRDRW 0.16
5 FKPRRFRERW 0.18
6 HKPRRFRDPW 0.18
7 HKPRRFRPRW 0.21
8 HKPRRFRDMW 0.22
9 FKPRKFRDRW 0.23
10 HKPRLFRDRW 0.25
11 FKPRRFRDPW 0.25
12 FKPRRFRPRW 0.28
13 HKPRKFRERW 0.28
14 HKPRRFREPW 0.29
15 FKPRRFRDMW 0.29
16 FKPRLFRDRW 0.32
17 HKPRRFREMW 0.33
18 HKPRKFRDPW 0.34
19 HKRRRFRDRW 0.34
20 FKPRKFRERW 0.34
21 HKPRLFRERW 0.36
22 FKPRRFREPW 0.36
23 HKPRKFRPRW 0.37
24 HKPRKFRDMW 0.38
25 YKPRRFRDRW 0.38
26 HKPRRFRPPW 0.39
27 FKPRRFREMW 0.4
28 FKRRRFRDRW 0.41
29 FKPRKFRDPW 0.41
30 HKKRRFRDRW 0.41
31 FKPRLFRERW 0.43
32 HKPRRFRPMW 0.43
33 HKPRLFRDPW 0.43
34 FKPRKFRPRW 0.44
35 HKRRRFRERW 0.45
36 FKPRKFRDMW 0.45
37 HKPRLFRPRW 0.46
38 FKPRRFRPPW 0.46
39 HKPRKFREPW 0.46
40 HKPRLFRDMW 0.47
41 FKKRRFRDRW 0.47
42 HKPRRFRDRH 0.48
43 HKPRKFREMW 0.49
44 HKRRKFRDRW 0.5
45 YKPRRFRERW 0.5
46 FKPRLFRDPW 0.5
47 FKPRRFRPMW 0.5
48 HKRRRFRDPW 0.52
49 FKRRRFRERW 0.52
50 FKPRKFREPW 0.52
51 HKKRRFRERW 0.52
52 FKPRLFRPRW 0.53
53 YKPRKFRDRW 0.54
54 FKPRLFRDMW 0.54
55 FKPRRFRDRH 0.54
56 HKRRRFRPRW 0.55
57 HKPRLFREPW 0.55
58 HKPRKFRPPW 0.55
59 HKRRRFRDMW 0.55
60 YKPRRFRDPW 0.56
61 FKPRKFREMW 0.56
62 FKRRKFRDRW 0.57
63 HKKRKFRDRW 0.57
64 HKPRLFREMW 0.58
65 FKKRRFRERW 0.59
66 HKKRRFRDPW 0.59
67 HKRRLFRDRW 0.59
68 YKPRRFRPRW 0.59
69 HKPRRFRERH 0.59
70 FKRRRFRDPW 0.59
71 HKPRKFRPMW 0.59
72 YKPRRFRDMW 0.6
73 HKRRKFRERW 0.61
74 FKPRLFREPW 0.61
75 FKRRRFRDMW 0.62
76 HKKRRFRDMW 0.62
77 FKPRKFRPPW 0.62
78 HKKRRFRPRW 0.62
79 FKRRRFRPRW 0.62
80 HKRRRFREPW 0.63
81 YKPRLFRDRW 0.63
82 HKPRKFRDRH 0.64
83 HKPRLFRPPW 0.64
84 FKKRKFRDRW 0.64
85 FKPRLFREMW 0.65
86 FKRRLFRDRW 0.66
87 FKPRRFRERH 0.66
88 HKKRLFRDRW 0.66
89 FKKRRFRDPW 0.66
90 YKPRKFRERW 0.66
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 FKPRRFREPW

2.11

-6.88

-4.77
2 HKPRLFRERW

2.12

-5.96

-3.84
3 FKPRKFRERW

2.73

-6.55

-3.82
4 FKPRRFRDPW

2.67

-6.45

-3.78
5 HKPRRFRPPW

2.64

-6.24

-3.6
6 HKPRRFRPRW

3.18

-6.57

-3.39
7 FKPRKFRDPW

3.12

-6.46

-3.34
8 HKKRRFRDRW

2.75

-5.82

-3.07
9 FKPRRFRDRW

3.82

-6.85

-3.03
10 FKRRRFRDRW

3.72

-6.66

-2.94
11 HKRRRFRDRW

2.19

-4.99

-2.8
12 HKPRKFRDPW

2.87

-5.65

-2.78
13 YKPRRFRDRW

3.47

-6.01

-2.54
14 HKPRRFRDRW

3.04

-5.53

-2.49
15 FKPRRFRDMW

3.52

-5.96

-2.44
16 FKPRRFRPRW

2.36

-4.71

-2.35
17 FKPRRFRERW

2.68

-4.99

-2.31
18 HKPRKFRDMW

3.06

-5.32

-2.26
19 HKPRKFRDRW

2.85

-5.09

-2.24
20 FKPRRFREMW

2.88

-5.11

-2.23
21 HKPRRFRERW

3.53

-5.52

-1.99
22 HKPRRFRDPW

3.88

-5.82

-1.94
23 HKPRKFRPRW

2.81

-4.71

-1.9
24 HKPRRFREPW

3.04

-4.43

-1.39
25 HKPRRFRDMW

3.93

-5.21

-1.28
26 HKPRRFREMW

4.61

-5.85

-1.24
27 HKPRKFRERW

3.47

-4.67

-1.2
28 HKPRLFRDRW

4.13

-4.92

-0.79
29 FKPRLFRDRW

3.47

-4.25

-0.78
30 FKPRKFRDRW

4.47

-4.59

-0.12

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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