Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1ZUY-26.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala
A
 A
A
 A
A
A
A
 A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 1.694 ΔGbinding -1.047
TOTAL
 0.647
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.638 Torsional clash 0.530
Van der Waals -3.575 Backbone clash 0.009
Electrostatics 0.232 Helix dipole 0.000
Solvation Polar 4.244 Water bridges 0.000
Solvation Hyd -4.484 Disulfide 0.000
VdW clashes 0.021 Electrost. Kon 0.323
Entropy sc 0.398 Part.cov.bonds 0.000
Entropy mc

2.539

 ΔGstability

7.436
       

Predicted ligand sequences for model [MYO5_1ZUY-26.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1ZUY-26.PDB  

(data)
# Predicted Sequences Value Calculate
1 DDRKRRPPR 0.0
2 DDRKKRPPR 0.04
3 DDRKRRFPR 0.04
4 DRRKRRPPR 0.07
5 DDRKKRFPR 0.07
6 DRRKRRFPR 0.1
7 DRRKKRPPR 0.11
8 DDRKHRPPR 0.12
9 DRRKKRFPR 0.14
10 DDRKHRFPR 0.15
11 DRRKHRPPR 0.18
12 DDRKRRPRR 0.21
13 DDRKRRPER 0.22
14 DRRKHRFPR 0.22
15 DERKRRPPR 0.25
16 DDRKKRPRR 0.25
17 DDRKRRFRR 0.25
18 DDRKKRPER 0.26
19 DDRKRRFER 0.26
20 DRRKRRPRR 0.28
21 DERKRRFPR 0.29
22 DDRKKRFRR 0.29
23 DRRKRRPER 0.29
24 DDRKKRFER 0.29
25 DERKKRPPR 0.29
26 DDRRRRPPR 0.31
27 DRRKKRPER 0.32
28 DERKKRFPR 0.32
29 DRRKKRPRR 0.32
30 DRRKRRFER 0.32
31 DRRKRRFRR 0.32
32 DDRKHRPRR 0.33
33 DDRKHRPER 0.34
34 DDRRRRFPR 0.35
35 DDRRKRPPR 0.35
36 DRRKKRFER 0.36
37 DRRKKRFRR 0.36
38 DERKHRPPR 0.37
39 DDRKHRFER 0.37
40 DDRKHRFRR 0.37
41 DDRRKRFPR 0.38
42 DRRRRRPPR 0.38
43 DERKHRFPR 0.4
44 DRRKHRPER 0.4
45 DRRKHRPRR 0.4
46 DRRRRRFPR 0.41
47 DRRRKRPPR 0.41
48 DDRRHRPPR 0.43
49 DRRKHRFER 0.44
50 DRRKHRFRR 0.44
51 DRRRKRFPR 0.45
52 DDRHRRPPR 0.45
53 DERKRRPRR 0.46
54 DDRRHRFPR 0.46
55 DERKRRPER 0.47
56 DDRHRRFPR 0.49
57 DDRHKRPPR 0.49
58 DRRRHRPPR 0.49
59 DERKKRPRR 0.5
60 DERKRRFRR 0.5
61 DERKKRPER 0.51
62 DERKRRFER 0.51
63 DRRHRRPPR 0.52
64 DRRRHRFPR 0.53
65 DDRHKRFPR 0.53
66 DDRRRRPRR 0.53
67 DDRRRRPER 0.53
68 DERKKRFER 0.54
69 DERKKRFRR 0.54
70 DDRRKRPRR 0.56
71 DERRRRPPR 0.56
72 DDRRRRFRR 0.56
73 DRRHRRFPR 0.56
74 DRRHKRPPR 0.56
75 DDRHHRPPR 0.57
76 DDRRRRFER 0.57
77 DDRRKRPER 0.57
78 DERKHRPRR 0.58
79 DERKHRPER 0.59
80 DRRRRRPRR 0.59
81 DDRRKRFER 0.6
82 DERRKRPPR 0.6
83 DDRRKRFRR 0.6
84 DRRRRRPER 0.6
85 DRRHKRFPR 0.6
86 DERRRRFPR 0.6
87 DDRHHRFPR 0.61
88 DERKHRFRR 0.62
89 DERKHRFER 0.62
90 DRRRKRPER 0.63
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 DRRKKRPPR

2.64

-9.35

-6.71
2 DRRKRRFER

2.11

-8.8

-6.69
3 DERKRRFPR

2.66

-9.24

-6.58
4 DDRKKRPPR

2.29

-8.85

-6.56
5 DERKRRPPR

2.28

-8.74

-6.46
6 DDRKRRPPR

2.4

-8.81

-6.41
7 DRRKRRPPR

1.94

-8.28

-6.34
8 DRRKRRPER

2.67

-8.94

-6.27
9 DERKKRPPR

2.03

-8.26

-6.23
10 DRRKHRPPR

1.94

-8.05

-6.11
11 DDRKHRPPR

1.84

-7.86

-6.02
12 DRRKHRFPR

2.52

-8.53

-6.01
13 DRRKRRPRR

2.1

-7.99

-5.89
14 DRRKRRFPR

2.77

-8.54

-5.77
15 DRRKKRPRR

2.61

-8.26

-5.65
16 DDRRRRPPR

2.39

-8.0

-5.61
17 DDRKRRFPR

3.51

-9.08

-5.57
18 DDRKKRFRR

2.05

-7.5

-5.45
19 DDRKKRPER

2.3

-7.69

-5.39
20 DDRKKRPRR

2.84

-8.12

-5.28
21 DDRKRRFER

3.16

-8.26

-5.1
22 DDRKRRPER

2.44

-7.47

-5.03
23 DRRKKRPER

2.28

-7.14

-4.86
24 DDRKKRFER

2.81

-7.65

-4.84
25 DDRKHRFPR

2.41

-6.99

-4.58
26 DDRKRRPRR

1.94

-6.21

-4.27
27 DRRKKRFPR

2.91

-7.18

-4.27
28 DDRKRRFRR

3.36

-7.02

-3.66
29 DDRKKRFPR

2.65

-5.93

-3.28
30 DERKKRFPR

2.54

-5.63

-3.09

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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