Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1ZUY-1.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
A
A
A
 A A A A A A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.417 ΔGbinding -5.166
TOTAL
 -4.749
Backbone Hb -1.275 Cis_bond 0.000
Sidechain Hb -1.275 Torsional clash 0.905
Van der Waals -4.064 Backbone clash 0.057
Electrostatics -0.185 Helix dipole 0.000
Solvation Polar 4.213 Water bridges -0.043
Solvation Hyd -5.893 Disulfide 0.000
VdW clashes 0.014 Electrost. Kon -0.249
Entropy sc 0.832 Part.cov.bonds 0.000
Entropy mc

1.854

 ΔGstability

1.197
       

Predicted ligand sequences for model [MYO5_1ZUY-1.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1ZUY-1.PDB  

(data)
# Predicted Sequences Value Calculate
1 RKSRDRRRRY 0.0
2 RKRRDRRRRY 0.01
3 RKLRDRRRRY 0.01
4 RKSRDHRRRY 0.01
5 RKLRDHRRRY 0.01
6 RKRRDHRRRY 0.02
7 RKSRDRMRRY 0.04
8 RKLRDRMRRY 0.05
9 RKLRDHMRRY 0.05
10 RKSRDHMRRY 0.05
11 RKRRDRMRRY 0.06
12 RKRRDHMRRY 0.06
13 RKSRDRRRRH 0.07
14 RKSRMRRRRY 0.07
15 RKLRDRRRRH 0.08
16 RKSRDHRRRH 0.08
17 RKLRMHRRRY 0.08
18 RKLRMRRRRY 0.08
19 RKLRDHRRRH 0.08
20 RKSRMHRRRY 0.08
21 RKRRMHRRRY 0.09
22 RKRRDRRRRH 0.09
23 RKRRDHRRRH 0.09
24 RKRRMRRRRY 0.09
25 RKLRDLRRRY 0.1
26 RKSRDLRRRY 0.1
27 RKRRDLRRRY 0.11
28 RKSRDRRKRY 0.11
29 RKSRMRMRRY 0.12
30 RKLRDHRKRY 0.12
31 RKSRDRMRRH 0.12
32 RKSRMHMRRY 0.12
33 RKLRDRMRRH 0.12
34 RKLRDRRKRY 0.12
35 RKSRDHRKRY 0.12
36 RKSRDHMRRH 0.12
37 RKLRMRMRRY 0.12
38 RKLRMHMRRY 0.13
39 RKRRDRRKRY 0.13
40 RKLRDHMRRH 0.13
41 RKRRDHRKRY 0.13
42 RKRRDRMRRH 0.13
43 RKRRMRMRRY 0.13
44 RKRRMHMRRY 0.14
45 RKSRDLMRRY 0.14
46 RKRRDHMRRH 0.14
47 RKSRMRRRRH 0.15
48 RKSRPRRRRY 0.15
49 RKLRPRRRRY 0.15
50 RKLRDLMRRY 0.15
51 RKLRMRRRRH 0.15
52 RKSRPHRRRY 0.15
53 RKSRMHRRRH 0.15
54 RKSRDRRRRF 0.16
55 RKRRDLMRRY 0.16
56 RKLRDRRRRF 0.16
57 RKSRDHRRRF 0.16
58 RKLRMHRRRH 0.16
59 RKSRDRMKRY 0.16
60 RKSRDHMKRY 0.16
61 RKRRPRRRRY 0.16
62 RKLRPHRRRY 0.16
63 RKLRDRMKRY 0.16
64 RKRRMRRRRH 0.16
65 RKRRDHMKRY 0.17
66 RKRRMHRRRH 0.17
67 RKRRDRRRRF 0.17
68 RKRRDRMKRY 0.17
69 RKLRDHMKRY 0.17
70 RKSRDLRRRH 0.17
71 RKRRPHRRRY 0.17
72 RKLRDHRRRF 0.17
73 RKSRMLRRRY 0.17
74 RKLRMLRRRY 0.18
75 RKLRDLRRRH 0.18
76 RKRRDHRRRF 0.18
77 RKSRMRMRRH 0.19
78 RKLRMRRKRY 0.19
79 RKRRDLRRRH 0.19
80 RKSRPRMRRY 0.19
81 RKSRMHRKRY 0.19
82 RKRRMLRRRY 0.19
83 RKSRMRRKRY 0.19
84 RKLRDRRKRH 0.19
85 RKSRDHRKRH 0.19
86 RKSRDRRKRH 0.19
87 RKSRPHMRRY 0.2
88 RKLRDHRKRH 0.2
89 RKSRDRMRRF 0.2
90 RKLRMHMRRH 0.2
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RKSRDHMRRY

2.34

-8.9

-6.56
2 RKSRDRRRRH

2.83

-9.36

-6.53
3 RKRRDRRRRH

3.0

-9.4

-6.4
4 RKLRDHRRRH

2.37

-8.68

-6.31
5 RKLRDRMRRY

2.58

-8.6

-6.02
6 RKLRDHRRRY

2.94

-8.95

-6.01
7 RKSRDRMRRY

2.85

-8.8

-5.95
8 RKSRDHRRRY

2.45

-8.4

-5.95
9 RKLRDHRKRY

2.47

-8.35

-5.88
10 RKRRDHRRRY

2.44

-8.25

-5.81
11 RKRRDLRRRY

3.01

-8.81

-5.8
12 RKSRMHRRRY

2.16

-7.94

-5.78
13 RKRRDRMRRY

3.06

-8.8

-5.74
14 RKSRDRRKRY

2.8

-8.23

-5.43
15 RKSRDHRRRH

2.03

-7.4

-5.37
16 RKSRMRMRRY

2.67

-8.0

-5.33
17 RKRRDRRRRY

2.81

-8.1

-5.29
18 RKLRDLRRRY

3.02

-8.23

-5.21
19 RKLRDRRRRH

2.77

-7.92

-5.15
20 RKRRDHMRRY

2.82

-7.83

-5.01
21 RKRRDHRRRH

2.23

-7.18

-4.95
22 RKLRDHMRRY

2.49

-7.37

-4.88
23 RKLRMHRRRY

2.39

-7.13

-4.74
24 RKSRMRRRRY

2.55

-7.07

-4.52
25 RKSRDLRRRY

3.09

-7.54

-4.45
26 RKLRMRRRRY

2.93

-6.98

-4.05
27 RKLRDRRRRY

3.46

-7.44

-3.98
28 RKRRMHRRRY

2.43

-6.41

-3.98
29 RKSRDRRRRY

2.56

-6.52

-3.96
30 RKRRMRRRRY

2.94

-6.73

-3.79

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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