Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1YP5-7.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8
poly-Ala A G A A A A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 2.146 ΔGbinding 3.434
TOTAL
 5.580
Backbone Hb -1.275 Cis_bond 0.000
Sidechain Hb -1.275 Torsional clash 0.318
Van der Waals -3.577 Backbone clash 5.604
Electrostatics 0.072 Helix dipole 0.000
Solvation Polar 5.187 Water bridges -0.040
Solvation Hyd -4.348 Disulfide 0.000
VdW clashes 4.247 Electrost. Kon 0.091
Entropy sc 0.862 Part.cov.bonds 0.000
Entropy mc

3.171

 ΔGstability

14.715
       

Predicted ligand sequences for model [MYO5_1YP5-7.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1YP5-7.PDB  

(data)
# Predicted Sequences Value Calculate
1 FFPFPPWQ 0.0
2 FFRFPPWQ 0.14
3 FFDFPPWQ 0.2
4 FFPFPPWR 0.22
5 FFPRPPWQ 0.23
6 FFPFPEWQ 0.25
7 KFPFPPWQ 0.26
8 FFPFPPWA 0.28
9 FFPFMPWQ 0.31
10 FFPFWPWQ 0.31
11 FFPIPPWQ 0.33
12 FMPFPPWQ 0.35
13 FFRFPPWR 0.36
14 FFRRPPWQ 0.37
15 FFRFPEWQ 0.38
16 KFRFPPWQ 0.39
17 FFPFPLWQ 0.4
18 FFRFPPWA 0.42
19 FFDFPPWR 0.42
20 FFDRPPWQ 0.43
21 FFRFWPWQ 0.44
22 FYPFPPWQ 0.44
23 FFRFMPWQ 0.45
24 FFDFPEWQ 0.45
25 FFRIPPWQ 0.46
26 KFDFPPWQ 0.46
27 FFPRPPWR 0.46
28 FFPFPEWR 0.47
29 MFPFPPWQ 0.48
30 KFPFPPWR 0.48
31 FFDFPPWA 0.48
32 FFPRPEWQ 0.48
33 FMRFPPWQ 0.48
34 KFPRPPWQ 0.49
35 KFPFPEWQ 0.51
36 FFDFWPWQ 0.51
37 FFDFMPWQ 0.51
38 FFPRPPWA 0.52
39 FFDIPPWQ 0.53
40 FFPFPEWA 0.53
41 FFRFPLWQ 0.53
42 FFPFWPWR 0.53
43 KFPFPPWA 0.54
44 FFPFMPWR 0.54
45 FFPRWPWQ 0.54
46 FFPRMPWQ 0.55
47 FFPIPPWR 0.55
48 FMDFPPWQ 0.55
49 FFPFMEWQ 0.56
50 FFPFWEWQ 0.56
51 FMPFPPWR 0.57
52 KFPFMPWQ 0.57
53 KFPFWPWQ 0.57
54 FMPRPPWQ 0.58
55 FFPIPEWQ 0.58
56 FYRFPPWQ 0.58
57 FFRRPPWR 0.59
58 FFPFWPWA 0.59
59 KFPIPPWQ 0.59
60 FFPFMPWA 0.59
61 FFDFPLWQ 0.6
62 FMPFPEWQ 0.6
63 FFRFPEWR 0.61
64 KMPFPPWQ 0.61
65 FFPIPPWA 0.61
66 FFPFPLWR 0.62
67 FFRRPEWQ 0.62
68 KFRFPPWR 0.62
69 MFRFPPWQ 0.62
70 FMPFPPWA 0.63
71 KFRRPPWQ 0.63
72 FFPRPLWQ 0.63
73 FFPIWPWQ 0.64
74 FYDFPPWQ 0.64
75 FFPIMPWQ 0.64
76 KFRFPEWQ 0.64
77 FFRRPPWA 0.65
78 FMPFWPWQ 0.66
79 KFPFPLWQ 0.66
80 FFDRPPWR 0.66
81 FMPFMPWQ 0.66
82 FFRFWPWR 0.67
83 FFRFPEWA 0.67
84 FFRFMPWR 0.67
85 KFRFPPWA 0.67
86 FFDFPEWR 0.67
87 FYPFPPWR 0.67
88 FFDRPEWQ 0.68
89 FFPFPLWA 0.68
90 FYPRPPWQ 0.68
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 FFPRPPWQ

1.89

-6.02

-4.13
2 FFRFWPWQ

1.67

-5.75

-4.08
3 FFPFPPWA

2.01

-6.0

-3.99
4 FFPRPPWR

1.91

-5.89

-3.98
5 FFRFPPWR

1.71

-5.65

-3.94
6 FFPFPLWQ

1.91

-5.81

-3.9
7 FFPIPPWQ

1.58

-5.47

-3.89
8 FFPFWPWQ

1.73

-5.27

-3.54
9 FFDRPPWQ

2.18

-5.71

-3.53
10 KFPFPPWQ

1.8

-5.15

-3.35
11 FFRRPPWQ

1.94

-5.27

-3.33
12 MFPFPPWQ

1.57

-4.83

-3.26
13 FMPFPPWQ

1.8

-5.03

-3.23
14 FFRFPEWQ

1.93

-5.16

-3.23
15 FFRFMPWQ

1.86

-5.05

-3.19
16 FFPFPPWR

1.73

-4.81

-3.08
17 FFRIPPWQ

1.64

-4.71

-3.07
18 FFPFPPWQ

1.72

-4.62

-2.9
19 FFPFMPWQ

1.75

-4.55

-2.8
20 FFPFPEWQ

1.97

-4.53

-2.56
21 KFPFPPWR

1.84

-4.39

-2.55
22 FFRFPPWQ

1.75

-4.3

-2.55
23 KFDFPPWQ

1.65

-4.03

-2.38
24 FFDFPPWR

1.87

-4.06

-2.19
25 FFPFPEWR

1.89

-4.03

-2.14
26 FFRFPPWA

1.98

-4.08

-2.1
27 KFRFPPWQ

2.02

-4.05

-2.03
28 FFDFPEWQ

1.78

-3.7

-1.92
29 FFDFPPWQ

1.94

-3.86

-1.92
30 FYPFPPWQ

1.67

-3.31

-1.64

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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