Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1YP5-4.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
 A A
A
 A
A
A
 A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.472 ΔGbinding -5.123
TOTAL
 -4.651
Backbone Hb -1.275 Cis_bond 0.000
Sidechain Hb -1.275 Torsional clash 0.730
Van der Waals -4.920 Backbone clash 0.047
Electrostatics -0.274 Helix dipole 0.000
Solvation Polar 5.337 Water bridges 0.000
Solvation Hyd -6.956 Disulfide 0.000
VdW clashes 0.806 Electrost. Kon -0.344
Entropy sc 0.922 Part.cov.bonds 0.000
Entropy mc

2.125

 ΔGstability

2.144
       

Predicted ligand sequences for model [MYO5_1YP5-4.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1YP5-4.PDB  

(data)
# Predicted Sequences Value Calculate
1 RPPRRFRDRH 0.0
2 RPPRKFRDRH 0.04
3 RIPRRFRDRH 0.05
4 RPPRRFRDRW 0.07
5 RPPRRFRPRH 0.08
6 RIPRKFRDRH 0.1
7 RPPRKFRDRW 0.11
8 RPPRRFRDMH 0.11
9 RIPRRFRDRW 0.12
10 RPPRKFRPRH 0.12
11 RIPRRFRPRH 0.13
12 RPPRRFRPRW 0.14
13 RPPRKFRDMH 0.15
14 RIPRRFRDMH 0.16
15 RIPRKFRDRW 0.16
16 RPPRMFRDRH 0.17
17 RIPRKFRPRH 0.17
18 RPPRRFRDMW 0.17
19 RPPRRFRPMH 0.18
20 RPPRRFRDQH 0.18
21 RPPRKFRPRW 0.19
22 RIPRKFRDMH 0.2
23 RIPRRFRPRW 0.2
24 RIPRMFRDRH 0.22
25 RPPRKFRDMW 0.22
26 RPPRKFRPMH 0.23
27 RIPRRFRDMW 0.23
28 RPPRMFRDRW 0.23
29 RPPRKFRDQH 0.23
30 RIPRRFRPMH 0.24
31 RIPRKFRPRW 0.24
32 RPPRMFRPRH 0.24
33 RIPRRFRDQH 0.24
34 RPRRRFRDRH 0.25
35 RPPRRFRPMW 0.25
36 RLPRRFRDRH 0.25
37 RPPRRFRDQW 0.25
38 RPARRFRDRH 0.26
39 RPPRRFRPQH 0.26
40 RIPRKFRDMW 0.27
41 RIPRKFRDQH 0.28
42 RIPRKFRPMH 0.28
43 RPPRMFRDMH 0.28
44 RIPRMFRDRW 0.29
45 RPPRKFRPMW 0.29
46 RLPRKFRDRH 0.29
47 RPRRKFRDRH 0.29
48 RPPRRFRRRH 0.29
49 RPPRKFRDQW 0.29
50 RIPRRFRPMW 0.3
51 RPPRKFRPQH 0.3
52 RIPRMFRPRH 0.3
53 RIRRRFRDRH 0.3
54 RIPRRFRDQW 0.3
55 RPARKFRDRH 0.3
56 RPRRRFRDRW 0.31
57 RIARRFRDRH 0.31
58 RLPRRFRDRW 0.31
59 RIPRRFRPQH 0.31
60 RPPRMFRPRW 0.31
61 RPARRFRDRW 0.32
62 RPRRRFRPRH 0.32
63 RIPRMFRDMH 0.33
64 RLPRRFRPRH 0.33
65 RPPRRFRPQW 0.33
66 RIRRKFRDRH 0.34
67 RPPRKFRRRH 0.34
68 RPPRMFRDMW 0.34
69 RPARRFRPRH 0.34
70 RIPRRFRRRH 0.34
71 RIPRKFRDQW 0.35
72 RIPRKFRPMW 0.35
73 RPRRRFRDMH 0.35
74 RIARKFRDRH 0.35
75 RPPRMFRPMH 0.35
76 RPPRMFRDQH 0.35
77 RLPRKFRDRW 0.36
78 RPRRKFRDRW 0.36
79 RPPRRFRRRW 0.36
80 RIPRKFRPQH 0.36
81 RIPRMFRPRW 0.36
82 RIRRRFRDRW 0.36
83 RLPRRFRDMH 0.36
84 RLPRKFRPRH 0.37
85 RPRRKFRPRH 0.37
86 RPPRKFRPQW 0.37
87 RPARKFRDRW 0.37
88 RPARRFRDMH 0.37
89 RIARRFRDRW 0.38
90 RIRRRFRPRH 0.38
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RPPRKFRPRH

1.56

-9.79

-8.23
2 RPPRRFRDMH

1.87

-10.07

-8.2
3 RPPRKFRDQH

1.97

-10.07

-8.1
4 RPPRKFRPMH

1.67

-9.47

-7.8
5 RPPRRFRPRH

1.9

-9.54

-7.64
6 RIPRRFRDRH

2.3

-9.39

-7.09
7 RIPRMFRDRH

2.28

-9.32

-7.04
8 RPPRRFRDQH

1.91

-8.79

-6.88
9 RPPRRFRDRH

2.23

-9.08

-6.85
10 RIPRRFRDRW

1.94

-8.75

-6.81
11 RIPRRFRPMH

2.11

-8.9

-6.79
12 RPPRKFRDMH

2.8

-9.54

-6.74
13 RPPRMFRDRH

2.54

-9.26

-6.72
14 RIPRKFRPRH

2.29

-8.91

-6.62
15 RIPRKFRDMH

2.29

-8.9

-6.61
16 RPPRRFRPMH

1.7

-8.22

-6.52
17 RIPRRFRPRW

2.38

-8.8

-6.42
18 RPPRKFRDMW

1.92

-8.26

-6.34
19 RIPRRFRDMH

2.35

-8.59

-6.24
20 RIPRRFRPRH

2.36

-8.59

-6.23
21 RIPRKFRDRW

1.98

-7.88

-5.9
22 RPPRKFRDRH

2.31

-8.13

-5.82
23 RPPRRFRDMW

1.99

-7.6

-5.61
24 RPPRRFRDRW

2.41

-7.85

-5.44
25 RIPRRFRDMW

1.87

-6.99

-5.12
26 RPPRKFRPRW

2.15

-7.07

-4.92
27 RPPRKFRDRW

2.33

-7.11

-4.78
28 RPPRMFRDRW

1.74

-6.21

-4.47
29 RPPRRFRPRW

2.65

-6.99

-4.34
30 RIPRKFRDRH

2.28

-6.48

-4.2

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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