Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1YP5-29.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
 A A
A
 A A
A
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.547 ΔGbinding 1.030
TOTAL
 1.577
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.371
Van der Waals -3.483 Backbone clash 0.005
Electrostatics 0.089 Helix dipole 0.000
Solvation Polar 3.863 Water bridges 0.024
Solvation Hyd -4.498 Disulfide 0.000
VdW clashes 2.955 Electrost. Kon 0.100
Entropy sc 0.459 Part.cov.bonds 0.000
Entropy mc

2.424

 ΔGstability

13.008
       

Predicted ligand sequences for model [MYO5_1YP5-29.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1YP5-29.PDB  

(data)
# Predicted Sequences Value Calculate
1 HYPPIMPWWH 0.0
2 DYPPIMPWWH 0.0
3 DYKPIMPWWH 0.03
4 HYPPIMPWWR 0.03
5 DYPPIMPWWR 0.03
6 DRPPIMPWWH 0.04
7 HYKPIMPWWH 0.04
8 HRPPIMPWWH 0.05
9 HYKPIMPWWR 0.06
10 DYKPIMPWWR 0.06
11 DYPMIMPWWH 0.06
12 DYPPIMRWWH 0.07
13 HYPMIMPWWH 0.07
14 DRPPIMPWWR 0.07
15 HRPPIMPWWR 0.07
16 HYPPIMRWWH 0.07
17 DRKPIMPWWH 0.08
18 HRKPIMPWWH 0.08
19 DYPPIMRWWR 0.09
20 HYPMIMPWWR 0.09
21 DYPMIMPWWR 0.09
22 DYKMIMPWWH 0.1
23 DRKPIMPWWR 0.1
24 HRKPIMPWWR 0.1
25 HYPPIMRWWR 0.1
26 DYKPIMRWWH 0.1
27 HYKMIMPWWH 0.1
28 DRPMIMPWWH 0.11
29 HYPPIMEWWH 0.11
30 HRPMIMPWWH 0.11
31 HRPPIMRWWH 0.11
32 DYPPIMEWWH 0.11
33 DRPPIMRWWH 0.11
34 HYKPIMRWWH 0.11
35 DYKMIMPWWR 0.12
36 DRPMIMPWWR 0.13
37 HYPPIMEWWR 0.13
38 HRPMIMPWWR 0.13
39 DYPMIMRWWH 0.13
40 DYPPIMEWWR 0.13
41 DYKPIMRWWR 0.13
42 HYKMIMPWWR 0.13
43 HYKPIMRWWR 0.13
44 HRKMIMPWWH 0.14
45 HYKPIMEWWH 0.14
46 HRPPIMRWWR 0.14
47 DRKPIMRWWH 0.14
48 DYKPIMEWWH 0.14
49 DRKMIMPWWH 0.14
50 HYPMIMRWWH 0.14
51 DRPPIMRWWR 0.14
52 DRPPIMEWWH 0.15
53 HRPPIMEWWH 0.15
54 HRKPIMRWWH 0.15
55 DYPMIMRWWR 0.16
56 HYPMIMRWWR 0.16
57 HRKMIMPWWR 0.17
58 DYKMIMRWWH 0.17
59 HYKMIMRWWH 0.17
60 HYKPIMEWWR 0.17
61 DRKPIMRWWR 0.17
62 DYKPIMEWWR 0.17
63 DRKMIMPWWR 0.17
64 HYPMIMEWWH 0.17
65 DRPPIMEWWR 0.17
66 HRKPIMRWWR 0.17
67 DRPMIMRWWH 0.17
68 DYPMIMEWWH 0.17
69 HRKPIMEWWH 0.18
70 FYPPIMPWWH 0.18
71 DRKPIMEWWH 0.18
72 HRPPIMEWWR 0.18
73 HRPMIMRWWH 0.18
74 DYKMIMRWWR 0.19
75 HYKMIMRWWR 0.19
76 DYPMIMEWWR 0.19
77 FYPPIMPWWR 0.2
78 HYLPIMPWWH 0.2
79 HYPMIMEWWR 0.2
80 HRPMIMRWWR 0.2
81 DYKMIMEWWH 0.2
82 DRPMIMRWWR 0.2
83 DYLPIMPWWH 0.2
84 HRKPIMEWWR 0.21
85 DRKMIMRWWH 0.21
86 DRKPIMEWWR 0.21
87 DRPMIMEWWH 0.21
88 HRKMIMRWWH 0.21
89 FYKPIMPWWH 0.21
90 HYKMIMEWWH 0.21
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 DYPPIMPWWH

1.59

-11.14

-9.55
2 HYPPIMRWWR

2.6

-11.4

-8.8
3 DYPMIMPWWH

2.29

-11.05

-8.76
4 HYPPIMPWWR

2.7

-11.33

-8.63
5 DYPPIMPWWR

2.26

-10.71

-8.45
6 DYPPIMRWWR

2.48

-10.92

-8.44
7 DYPMIMPWWR

1.79

-10.22

-8.43
8 DRPPIMPWWR

2.5

-10.9

-8.4
9 HRKPIMPWWR

2.31

-10.53

-8.22
10 DYPPIMRWWH

1.32

-9.47

-8.15
11 HYKPIMPWWR

1.55

-9.68

-8.13
12 DRKPIMPWWH

1.93

-10.04

-8.11
13 HYPPIMEWWH

1.82

-9.88

-8.06
14 DRKPIMPWWR

1.68

-9.73

-8.05
15 HRPPIMPWWR

2.44

-10.47

-8.03
16 DRPMIMPWWH

1.67

-9.63

-7.96
17 HYKMIMPWWH

2.23

-10.1

-7.87
18 HYPPIMPWWH

1.62

-9.46

-7.84
19 DYKPIMPWWH

2.18

-10.0

-7.82
20 DRPPIMPWWH

2.43

-10.23

-7.8
21 HYPMIMPWWR

1.66

-9.41

-7.75
22 HYPPIMRWWH

1.65

-9.39

-7.74
23 DYKPIMRWWH

1.77

-9.49

-7.72
24 HYKPIMPWWH

2.35

-9.95

-7.6
25 HRPPIMPWWH

1.62

-9.07

-7.45
26 DYKPIMPWWR

1.52

-8.89

-7.37
27 HRKPIMPWWH

1.51

-8.88

-7.37
28 DYKMIMPWWH

2.09

-9.42

-7.33
29 HRPMIMPWWH

2.63

-9.74

-7.11
30 HYPMIMPWWH

0.88

-5.84

-4.96

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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