Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1YP5-26.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala
A
 A A
A
A
A
 A A A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

(Help)

Intraclash 0.428 ΔGbinding -0.684
TOTAL
 -0.256
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.638 Torsional clash 0.322
Van der Waals -3.388 Backbone clash 0.006
Electrostatics 0.256 Helix dipole 0.000
Solvation Polar 4.272 Water bridges -0.000
Solvation Hyd -4.300 Disulfide 0.000
VdW clashes 0.004 Electrost. Kon 0.335
Entropy sc 0.407 Part.cov.bonds 0.000
Entropy mc

2.683

 ΔGstability

10.066
       

Predicted ligand sequences for model [MYO5_1YP5-26.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1YP5-26.PDB  

(data)
# Predicted Sequences Value Calculate
1 DDRPRMPPW 0.0
2 DDRPKMPPW 0.04
3 DDRPRMRPW 0.05
4 DRRPRMPPW 0.05
5 DDRPRMFPW 0.08
6 DDRPKMRPW 0.09
7 DRRPKMPPW 0.09
8 DRRPRMRPW 0.1
9 DDPPRMPPW 0.11
10 DDRPHMPPW 0.12
11 DDRKRMPPW 0.12
12 DDRPKMFPW 0.13
13 DRRPRMFPW 0.14
14 DRRPKMRPW 0.14
15 DDPPKMPPW 0.15
16 DRPPRMPPW 0.16
17 DDPPRMRPW 0.16
18 DDRPHMRPW 0.16
19 DDRKRMRPW 0.16
20 DDRKKMPPW 0.16
21 DRRKRMPPW 0.17
22 DDKPRMPPW 0.17
23 DRRPHMPPW 0.17
24 DRRPKMFPW 0.18
25 DDPPRMFPW 0.19
26 DDPPKMRPW 0.2
27 DRPPKMPPW 0.2
28 DDRPHMFPW 0.2
29 DDRPRMPRW 0.2
30 DDRKRMFPW 0.2
31 DRPPRMRPW 0.21
32 DRRKKMPPW 0.21
33 DDRKKMRPW 0.21
34 DRRPHMRPW 0.21
35 DDKPKMPPW 0.21
36 DDRPRMPEW 0.21
37 DDRPRRPPW 0.21
38 DDKPRMRPW 0.22
39 DRRKRMRPW 0.22
40 DDRPRMPPH 0.22
41 DRKPRMPPW 0.22
42 DDPPHMPPW 0.23
43 DDRKHMPPW 0.23
44 DDPKRMPPW 0.23
45 DDPPKMFPW 0.24
46 DDRKKMFPW 0.24
47 DRPPKMRPW 0.25
48 DDRPRMRRW 0.25
49 DRRPHMFPW 0.25
50 DERPRMPPW 0.25
51 DRPPRMFPW 0.25
52 DDRPKMPRW 0.25
53 DDRPKRPPW 0.26
54 DDRPKMPEW 0.26
55 DDRPRMREW 0.26
56 DRRKRMFPW 0.26
57 DRRPRMPRW 0.26
58 DDKPKMRPW 0.26
59 DRRKKMRPW 0.26
60 DDKPRMFPW 0.26
61 DDRPRRRPW 0.26
62 DDPKKMPPW 0.27
63 DRRPRRPPW 0.27
64 DRKPKMPPW 0.27
65 DDPPHMRPW 0.27
66 DRKPRMRPW 0.27
67 DRRPRMPEW 0.27
68 DDPKRMRPW 0.27
69 DDRPRMRPH 0.27
70 DDRPKMPPH 0.27
71 DRPPHMPPW 0.28
72 DRRPRMPPH 0.28
73 DRPKRMPPW 0.28
74 DDRKHMRPW 0.28
75 DERPKMPPW 0.29
76 DDKKRMPPW 0.29
77 DRRKHMPPW 0.29
78 DDRPRMFRW 0.29
79 DRPPKMFPW 0.29
80 DDKPHMPPW 0.29
81 DDRPKMRRW 0.29
82 DERPRMRPW 0.3
83 DRRKKMFPW 0.3
84 DDRPRMFEW 0.3
85 DDRPKRRPW 0.3
86 DDRPKMREW 0.3
87 DDKPKMFPW 0.3
88 DRRPKMPRW 0.3
89 DDRPRRFPW 0.3
90 DRRPRMRRW 0.3
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 DRPPKMPPW

0.83

-9.88

-9.05
2 DDRPHMRPW

0.74

-9.44

-8.7
3 DDPPRMPPW

0.71

-9.33

-8.62
4 DRPPRMPPW

1.0

-9.58

-8.58
5 DRRPKMPPW

0.9

-9.07

-8.17
6 DDPPRMFPW

1.17

-9.27

-8.1
7 DDRPRMPRW

0.95

-8.83

-7.88
8 DRRPHMPPW

0.8

-8.67

-7.87
9 DRRPRMPPW

1.56

-9.4

-7.84
10 DDRPRMFPW

1.28

-8.83

-7.55
11 DDRPKMFPW

1.3

-8.64

-7.34
12 DDPPKMPPW

0.74

-7.83

-7.09
13 DDRKRMPPW

0.95

-7.99

-7.04
14 DDKPRMPPW

0.83

-7.87

-7.04
15 DRRPKMFPW

1.47

-8.49

-7.02
16 DDRPHMFPW

1.38

-8.38

-7.0
17 DDPPKMRPW

0.9

-7.9

-7.0
18 DRRPRMFPW

1.35

-8.29

-6.94
19 DDRPHMPPW

0.96

-7.88

-6.92
20 DDRKKMPPW

1.09

-8.0

-6.91
21 DDRPRMPPW

0.83

-7.69

-6.86
22 DDRPKMPPW

0.86

-7.61

-6.75
23 DDPPRMRPW

0.99

-7.61

-6.62
24 DDRPRMRPW

1.17

-7.43

-6.26
25 DDRPKMRPW

1.08

-7.32

-6.24
26 DRRPRMRPW

1.26

-7.37

-6.11
27 DRRPKMRPW

1.15

-6.99

-5.84
28 DDRKRMFPW

1.61

-7.44

-5.83
29 DRRKRMPPW

1.06

-6.8

-5.74
30 DDRKRMRPW

1.16

-6.62

-5.46

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

  Comments or questions on the site? Send a mail to adandatabase@umh.es                                                             DISCLAIMER