Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1YP5-2.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala A
A
A
A
A
 A
A
 A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 1.728 ΔGbinding -3.989
TOTAL
 -2.261
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.873
Van der Waals -5.132 Backbone clash 0.064
Electrostatics -0.494 Helix dipole 0.000
Solvation Polar 6.018 Water bridges 0.000
Solvation Hyd -7.125 Disulfide 0.000
VdW clashes 0.589 Electrost. Kon -0.519
Entropy sc 0.824 Part.cov.bonds 0.000
Entropy mc

2.253

 ΔGstability

4.516
       

Predicted ligand sequences for model [MYO5_1YP5-2.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1YP5-2.PDB  

(data)
# Predicted Sequences Value Calculate
1 SPLYMFMDRF 0.0
2 SPAYMFMDRF 0.04
3 PPLYMFMDRF 0.04
4 SPPYMFMDRF 0.07
5 PPAYMFMDRF 0.08
6 PPPYMFMDRF 0.11
7 SPLYPFMDRF 0.13
8 SPLYDFMDRF 0.14
9 SPLYMFMERF 0.14
10 PPLYPFMDRF 0.17
11 SPAYPFMDRF 0.17
12 SPAYMFMERF 0.18
13 PPLYDFMDRF 0.18
14 SPAYDFMDRF 0.18
15 PPLYMFMERF 0.18
16 QPLYMFMDRF 0.19
17 SPPYPFMDRF 0.19
18 SPPYDFMDRF 0.21
19 SPPYMFMERF 0.21
20 PPAYPFMDRF 0.21
21 PPAYMFMERF 0.22
22 PPAYDFMDRF 0.22
23 PPPYPFMDRF 0.23
24 QPAYMFMDRF 0.23
25 PPPYMFMERF 0.25
26 PPPYDFMDRF 0.25
27 QPPYMFMDRF 0.26
28 SPLYPFMERF 0.27
29 SPLYDFMERF 0.28
30 SPAYPFMERF 0.31
31 PPLYPFMERF 0.31
32 PPLYDFMERF 0.32
33 SPAYDFMERF 0.32
34 QPLYPFMDRF 0.32
35 QPLYDFMDRF 0.33
36 SPLYMFMDRY 0.33
37 QPLYMFMERF 0.33
38 SPPYPFMERF 0.34
39 PPAYPFMERF 0.35
40 SPLYMFMPRF 0.35
41 SPLYMFMDRK 0.35
42 SPPYDFMERF 0.35
43 QPAYPFMDRF 0.36
44 PPAYDFMERF 0.36
45 QPAYDFMDRF 0.37
46 SPLYMYMDRF 0.37
47 QPAYMFMERF 0.37
48 SPAYMFMDRY 0.37
49 PPLYMFMDRY 0.37
50 PPPYPFMERF 0.38
51 PPLYMFMPRF 0.39
52 QPPYPFMDRF 0.39
53 SPAYMFMDRK 0.39
54 PPPYDFMERF 0.39
55 PPLYMFMDRK 0.39
56 SPAYMFMPRF 0.39
57 SPPYMFMDRY 0.4
58 QPPYMFMERF 0.4
59 QPPYDFMDRF 0.4
60 SPLYMFMDKF 0.4
61 SPPYMFMDRK 0.41
62 PPAYMFMDRY 0.41
63 SPAYMYMDRF 0.41
64 PPLYMYMDRF 0.41
65 SPPYMFMPRF 0.42
66 PPAYMFMPRF 0.43
67 PPAYMFMDRK 0.43
68 SPAYMFMDKF 0.44
69 PPPYMFMDRY 0.44
70 PPLYMFMDKF 0.44
71 SPPYMYMDRF 0.44
72 PPPYMFMDRK 0.45
73 PPAYMYMDRF 0.45
74 SPPYMFMDKF 0.46
75 SPLYPFMDRY 0.46
76 SPLYMFRDRF 0.46
77 PPPYMFMPRF 0.46
78 QPLYPFMERF 0.46
79 SPLYPFMDRK 0.48
80 SPLYDFMDRY 0.48
81 SPLYMFMERY 0.48
82 PPPYMYMDRF 0.48
83 PPAYMFMDKF 0.48
84 SPLYPFMPRF 0.48
85 QPLYDFMERF 0.48
86 SPLYDFMDRK 0.49
87 SPLYMFMERK 0.49
88 SPLYDFMPRF 0.49
89 SPAYMFRDRF 0.5
90 PPLYMFRDRF 0.5
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 PPPYPFMDRF

1.94

-12.07

-10.13
2 SPLYDFMERF

2.2

-12.28

-10.08
3 SPPYPFMDRF

2.07

-11.72

-9.65
4 PPPYDFMDRF

2.01

-11.37

-9.36
5 PPPYMFMERF

2.01

-11.03

-9.02
6 PPLYMFMDRF

1.92

-10.59

-8.67
7 PPAYMFMERF

2.37

-11.04

-8.67
8 PPLYDFMDRF

1.84

-10.46

-8.62
9 PPLYPFMDRF

1.96

-10.45

-8.49
10 PPLYMFMERF

1.82

-10.26

-8.44
11 QPPYMFMDRF

1.85

-10.14

-8.29
12 PPAYMFMDRF

2.37

-10.66

-8.29
13 PPAYPFMDRF

1.85

-10.11

-8.26
14 PPAYDFMDRF

1.96

-10.18

-8.22
15 SPAYDFMDRF

2.32

-10.24

-7.92
16 QPAYMFMDRF

2.04

-9.87

-7.83
17 SPPYDFMDRF

2.51

-10.29

-7.78
18 QPLYMFMDRF

1.92

-9.61

-7.69
19 SPPYMFMERF

1.98

-9.31

-7.33
20 PPPYMFMDRF

2.01

-9.21

-7.2
21 SPPYMFMDRF

2.39

-9.56

-7.17
22 SPLYPFMERF

2.16

-9.17

-7.01
23 SPLYMFMDRF

2.0

-8.75

-6.75
24 SPAYPFMDRF

1.88

-8.54

-6.66
25 SPAYMFMDRF

2.3

-8.83

-6.53
26 SPAYPFMERF

1.99

-8.48

-6.49
27 SPLYPFMDRF

2.01

-8.44

-6.43
28 SPAYMFMERF

2.79

-9.19

-6.4
29 SPLYMFMERF

2.66

-8.63

-5.97
30 SPLYDFMDRF

2.41

-8.24

-5.83

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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