Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1YP5-10.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8
poly-Ala
A
 A
A
 A
A
 A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

(Help)

Intraclash 1.849 ΔGbinding 3.938
TOTAL
 5.787
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.638 Torsional clash 0.816
Van der Waals -3.798 Backbone clash 2.561
Electrostatics 0.105 Helix dipole 0.000
Solvation Polar 4.251 Water bridges -0.066
Solvation Hyd -5.018 Disulfide 0.000
VdW clashes 4.793 Electrost. Kon 0.121
Entropy sc 0.455 Part.cov.bonds 0.000
Entropy mc

3.556

 ΔGstability

15.184
       

Predicted ligand sequences for model [MYO5_1YP5-10.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1YP5-10.PDB  

(data)
# Predicted Sequences Value Calculate
1 RKRKGWWR 0.0
2 RKRKGWRR 0.01
3 RKIKGWWR 0.04
4 RKIKGWRR 0.05
5 RPRKGWWR 0.07
6 RKRMGWWR 0.07
7 RKRMGWRR 0.08
8 RPRKGWRR 0.08
9 RKFKGWWR 0.09
10 RPIKGWWR 0.1
11 RKFKGWRR 0.1
12 RPIKGWRR 0.11
13 RKIMGWWR 0.11
14 RKIMGWRR 0.12
15 RKRIGWWR 0.13
16 RPRMGWWR 0.14
17 RKRIGWRR 0.14
18 RKRKGMWR 0.15
19 RPRMGWRR 0.15
20 RPFKGWWR 0.16
21 RKRKGMRR 0.16
22 RKFMGWWR 0.16
23 RPFKGWRR 0.17
24 RKIIGWWR 0.17
25 RPIMGWWR 0.17
26 RKIIGWRR 0.18
27 RKIKGMWR 0.18
28 RKFMGWRR 0.18
29 RPIMGWRR 0.18
30 RKRKGIWR 0.19
31 RKRKGIRR 0.2
32 RKIKGMRR 0.2
33 RPRIGWWR 0.2
34 RPRKGMWR 0.21
35 RPRIGWRR 0.21
36 RKRMGMWR 0.22
37 RPRKGMRR 0.22
38 RKIKGIWR 0.22
39 RKRMGMRR 0.23
40 RKIKGIRR 0.23
41 RKFIGWWR 0.23
42 RPFMGWWR 0.23
43 RKFIGWRR 0.24
44 RKFKGMWR 0.24
45 RPIIGWWR 0.24
46 RPFMGWRR 0.24
47 RPIKGMWR 0.25
48 RPIIGWRR 0.25
49 RPRKGIWR 0.25
50 RKFKGMRR 0.25
51 RPIKGMRR 0.26
52 RKRMGIWR 0.26
53 RKIMGMWR 0.26
54 RPRKGIRR 0.26
55 RKRMGIRR 0.27
56 RKIMGMRR 0.27
57 RKRIGMWR 0.28
58 RPRMGMWR 0.28
59 RKFKGIWR 0.28
60 YKRKGWWR 0.28
61 RPRMGMRR 0.29
62 YKRKGWRR 0.29
63 RKRIGMRR 0.29
64 RPIKGIWR 0.29
65 RKFKGIRR 0.29
66 RPFIGWWR 0.29
67 RKIMGIWR 0.29
68 RPIKGIRR 0.3
69 RKIMGIRR 0.3
70 RPFIGWRR 0.3
71 RPFKGMWR 0.31
72 RKFMGMWR 0.31
73 RPRMGIWR 0.32
74 RPFKGMRR 0.32
75 RKFMGMRR 0.32
76 RKIIGMWR 0.32
77 RKRIGIWR 0.32
78 YKIKGWWR 0.32
79 RPIMGMWR 0.32
80 RKRIGIRR 0.33
81 RPRMGIRR 0.33
82 YKIKGWRR 0.33
83 RKIIGMRR 0.33
84 RPIMGMRR 0.33
85 RKRKGWHR 0.34
86 RPFKGIWR 0.34
87 YKRMGWWR 0.35
88 RKFMGIWR 0.35
89 RPRIGMWR 0.35
90 YPRKGWWR 0.35
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 RPRMGWRR

1.29

-8.89

-7.6
2 RPFKGWRR

0.91

-8.09

-7.18
3 RPIMGWRR

1.6

-8.73

-7.13
4 RPRMGWWR

1.92

-8.99

-7.07
5 RKRMGWWR

1.6

-8.61

-7.01
6 RPIMGWWR

1.92

-8.75

-6.83
7 RPIKGWRR

1.34

-8.16

-6.82
8 RKRMGWRR

1.55

-8.26

-6.71
9 RKFMGWRR

1.86

-8.5

-6.64
10 RPRKGWRR

1.41

-7.97

-6.56
11 RKIKGWRR

1.4

-7.93

-6.53
12 RKIMGWRR

1.66

-8.17

-6.51
13 RPRKGWWR

2.02

-8.41

-6.39
14 RKIIGWRR

1.89

-8.16

-6.27
15 RKFKGWRR

1.38

-7.52

-6.14
16 RKRIGWWR

2.34

-8.46

-6.12
17 RPIKGWWR

1.92

-8.0

-6.08
18 RKRIGWRR

1.84

-7.82

-5.98
19 RPFKGWWR

1.97

-7.95

-5.98
20 RKIKGWWR

2.32

-8.2

-5.88
21 RKRKGWRR

1.76

-7.51

-5.75
22 RKRKGWWR

2.36

-8.02

-5.66
23 RKFMGWWR

1.72

-7.37

-5.65
24 RKRKGIWR

2.37

-7.85

-5.48
25 RKIIGWWR

2.02

-7.48

-5.46
26 RKRKGMWR

2.56

-8.02

-5.46
27 RKIKGMWR

2.51

-7.92

-5.41
28 RKIMGWWR

2.43

-7.31

-4.88
29 RKRKGMRR

1.7

-6.55

-4.85
30 RKFKGWWR

2.24

-6.9

-4.66

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

  Comments or questions on the site? Send a mail to adandatabase@umh.es                                                             DISCLAIMER