Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1VA7-29.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
 A A
A
A
 A
A
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 4.633 ΔGbinding 0.162
TOTAL
 4.795
Backbone Hb 0.000 Cis_bond 0.000
Sidechain Hb -0.000 Torsional clash 0.734
Van der Waals -3.614 Backbone clash 0.008
Electrostatics 0.061 Helix dipole 0.000
Solvation Polar 4.066 Water bridges 0.000
Solvation Hyd -4.656 Disulfide 0.000
VdW clashes 0.573 Electrost. Kon 0.068
Entropy sc 0.302 Part.cov.bonds 0.000
Entropy mc

2.628

 ΔGstability

14.500
       

Predicted ligand sequences for model [MYO5_1VA7-29.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1VA7-29.PDB  

(data)
# Predicted Sequences Value Calculate
1 HIWPRPFRWH 0.0
2 RIWPRPFRWH 0.01
3 KIWPRPFRWH 0.01
4 HIWPRPFRWR 0.05
5 RIWPRPFRWR 0.06
6 KIWPRPFRWR 0.07
7 HIWMRPFRWH 0.14
8 RIWMRPFRWH 0.15
9 KIWMRPFRWH 0.16
10 HIWWRPFRWH 0.19
11 HIWMRPFRWR 0.19
12 RIWWRPFRWH 0.2
13 RIWMRPFRWR 0.2
14 HWWPRPFRWH 0.2
15 KIWWRPFRWH 0.21
16 KIWMRPFRWR 0.21
17 RWWPRPFRWH 0.21
18 KWWPRPFRWH 0.22
19 HIFPRPFRWH 0.23
20 HIWPRPFRWK 0.23
21 RIWPRPFRWK 0.23
22 HIWWRPFRWR 0.24
23 RIFPRPFRWH 0.24
24 KIWPRPFRWK 0.24
25 RIWWRPFRWR 0.25
26 KIFPRPFRWH 0.25
27 KIWWRPFRWR 0.26
28 RWWPRPFRWR 0.26
29 HWWPRPFRWR 0.26
30 KWWPRPFRWR 0.27
31 HIFPRPFRWR 0.28
32 RIFPRPFRWR 0.29
33 KIFPRPFRWR 0.3
34 HILPRPFRWH 0.34
35 HWWMRPFRWH 0.34
36 RWWMRPFRWH 0.35
37 RILPRPFRWH 0.35
38 KILPRPFRWH 0.36
39 KWWMRPFRWH 0.36
40 HIFMRPFRWH 0.37
41 RIWMRPFRWK 0.37
42 HIWMRPFRWK 0.37
43 KIWMRPFRWK 0.38
44 RIFMRPFRWH 0.38
45 HWWWRPFRWH 0.39
46 HILPRPFRWR 0.39
47 KIFMRPFRWH 0.39
48 HWWMRPFRWR 0.4
49 RWWMRPFRWR 0.4
50 RILPRPFRWR 0.4
51 RWWWRPFRWH 0.4
52 HIWPRPPRWH 0.41
53 KWWWRPFRWH 0.41
54 RIWPRPPRWH 0.41
55 KILPRPFRWR 0.41
56 KWWMRPFRWR 0.41
57 HIFMRPFRWR 0.42
58 RIWWRPFRWK 0.42
59 KIWPRPPRWH 0.42
60 HIWWRPFRWK 0.42
61 HIFWRPFRWH 0.42
62 RIWPRIFRWH 0.43
63 KIWWRPFRWK 0.43
64 HWFPRPFRWH 0.43
65 RIFWRPFRWH 0.43
66 RIFMRPFRWR 0.43
67 HIWPRIFRWH 0.43
68 HWWPRPFRWK 0.43
69 KIWPRIFRWH 0.44
70 RWFPRPFRWH 0.44
71 KIFWRPFRWH 0.44
72 KIFMRPFRWR 0.44
73 RWWPRPFRWK 0.44
74 HWWWRPFRWR 0.45
75 KWFPRPFRWH 0.45
76 RWWWRPFRWR 0.45
77 KWWPRPFRWK 0.45
78 KWWWRPFRWR 0.46
79 HIFPRPFRWK 0.46
80 HIWPRPPRWR 0.46
81 HMWPRPFRWH 0.46
82 RIWPRPPRWR 0.46
83 KIWPRPPRWR 0.47
84 RMWPRPFRWH 0.47
85 KIFPRPFRWK 0.47
86 HIFWRPFRWR 0.47
87 RIFPRPFRWK 0.47
88 RIWPRIFRWR 0.48
89 KMWPRPFRWH 0.48
90 HILMRPFRWH 0.48
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RIWPRPFRWK

2.78

-10.76

-7.98
2 RWWPRPFRWH

3.49

-10.63

-7.14
3 HIWMRPFRWH

3.93

-10.81

-6.88
4 HIWMRPFRWR

3.82

-10.7

-6.88
5 KIWMRPFRWR

3.12

-9.93

-6.81
6 HIWPRPFRWK

3.36

-9.96

-6.6
7 RIWWRPFRWR

3.92

-10.42

-6.5
8 RIWMRPFRWH

3.88

-10.24

-6.36
9 KIWPRPFRWK

3.43

-9.61

-6.18
10 RIFPRPFRWH

3.67

-9.77

-6.1
11 HIWPRPFRWR

3.48

-9.54

-6.06
12 KIWWRPFRWR

4.11

-10.12

-6.01
13 KIFPRPFRWH

3.02

-9.01

-5.99
14 KIWPRPFRWH

3.43

-9.26

-5.83
15 KWWPRPFRWH

3.96

-9.77

-5.81
16 KWWPRPFRWR

3.78

-9.55

-5.77
17 HIFPRPFRWH

3.39

-9.16

-5.77
18 HIWWRPFRWR

3.56

-9.28

-5.72
19 KIWMRPFRWH

3.85

-9.45

-5.6
20 HIWWRPFRWH

3.64

-9.08

-5.44
21 RIWPRPFRWH

3.91

-9.13

-5.22
22 HWWPRPFRWH

3.81

-8.93

-5.12
23 RIWWRPFRWH

3.96

-8.74

-4.78
24 RIWMRPFRWR

3.93

-8.67

-4.74
25 RWWPRPFRWR

4.28

-8.9

-4.62
26 HWWPRPFRWR

3.63

-8.21

-4.58
27 HIWPRPFRWH

4.29

-8.8

-4.51
28 RIWPRPFRWR

4.48

-8.95

-4.47
29 KIWWRPFRWH

3.82

-8.24

-4.42
30 KIWPRPFRWR

4.4

-8.53

-4.13

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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