Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1VA7-21.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
A
A
A
A
A
 A A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

(Help)

Intraclash 1.870 ΔGbinding -0.529
TOTAL
 1.341
Backbone Hb -0.638 Cis_bond 0.000
Sidechain Hb -0.638 Torsional clash 0.051
Van der Waals -1.398 Backbone clash 0.235
Electrostatics 0.032 Helix dipole 0.000
Solvation Polar 1.649 Water bridges -0.196
Solvation Hyd -1.967 Disulfide 0.000
VdW clashes 0.198 Electrost. Kon 0.029
Entropy sc 0.285 Part.cov.bonds 0.000
Entropy mc

2.063

 ΔGstability

12.957
       

Predicted ligand sequences for model [MYO5_1VA7-21.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1VA7-21.PDB  

(data)
# Predicted Sequences Value Calculate
1 EERIGMPRRH 0.0
2 EERIGMPRMH 0.03
3 EERIGMPRRK 0.05
4 EERIGMPRMK 0.08
5 EERIGHPRRH 0.09
6 EERIGRPRRH 0.09
7 EERIGHPRMH 0.11
8 EERIGRPRMH 0.12
9 EERIGHPRRK 0.14
10 EERIGRPRRK 0.15
11 EERIGRPRMK 0.17
12 EERIGHPRMK 0.17
13 YERIGMPRRH 0.24
14 EERMGMPRRH 0.26
15 EERIGMTRRH 0.26
16 YERIGMPRMH 0.27
17 EERIGMTRMH 0.28
18 EERMGMPRMH 0.28
19 EERIGMERRH 0.29
20 YERIGMPRRK 0.3
21 EERMGMPRRK 0.31
22 EERIGMTRRK 0.31
23 EERIGMERMH 0.32
24 YERIGMPRMK 0.33
25 YERIGHPRRH 0.33
26 EERIGMPMRH 0.33
27 EERMGHPRRH 0.34
28 EERIGHTRRH 0.34
29 YERIGRPRRH 0.34
30 EERIGMTRMK 0.34
31 EERMGMPRMK 0.34
32 EERMGRPRRH 0.35
33 EERIGMERRK 0.35
34 EERIGRTRRH 0.35
35 YERIGHPRMH 0.36
36 YERIGRPRMH 0.36
37 EERIGMPMMH 0.36
38 EERMGHPRMH 0.37
39 EERIGHTRMH 0.37
40 EERIGMERMK 0.37
41 EERIGRERRH 0.38
42 EERIGHERRH 0.38
43 YERIGHPRRK 0.38
44 EERMGRPRMH 0.38
45 EERIGRTRMH 0.38
46 EERIGMPMRK 0.38
47 YERIGRPRRK 0.39
48 EERMGHPRRK 0.4
49 EERIGHTRRK 0.4
50 EERMGRPRRK 0.4
51 EERIGRTRRK 0.4
52 EERIGRERMH 0.41
53 YERIGHPRMK 0.41
54 EERIGHERMH 0.41
55 EERIGMPMMK 0.41
56 YERIGRPRMK 0.42
57 EERMGHPRMK 0.42
58 EERIGHTRMK 0.42
59 EERIGHPMRH 0.42
60 EERIGRPMRH 0.42
61 EERIGHERRK 0.43
62 EERIHMPRRH 0.43
63 EERMGRPRMK 0.43
64 EERIGRTRMK 0.43
65 EERIGRERRK 0.44
66 EERIGHPMMH 0.44
67 EERIGRPMMH 0.45
68 EERIGMPKRH 0.46
69 EERIGHERMK 0.46
70 EERIHMPRMH 0.46
71 EERIGRERMK 0.47
72 EERIGHPMRK 0.47
73 EERIHMPRRK 0.48
74 EERIGRPMRK 0.48
75 EERIGMPKMH 0.49
76 EERIGRPMMK 0.5
77 EERIGHPMMK 0.5
78 YERIGMTRRH 0.5
79 YERMGMPRRH 0.5
80 EERMGMTRRH 0.51
81 EERIHMPRMK 0.51
82 EERIGMPKRK 0.52
83 EERIHRPRRH 0.52
84 EERIHHPRRH 0.52
85 YERIGMTRMH 0.53
86 YERMGMPRMH 0.53
87 YERIGMERRH 0.54
88 EERIHHPRMH 0.54
89 EERMGMTRMH 0.54
90 EERIGMPKMK 0.54
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 EERIGRPRMH

2.53

-8.64

-6.11
2 EERIGMERMH

2.12

-7.53

-5.41
3 EERIGHPRMH

2.13

-7.26

-5.13
4 EERMGMPRMH

2.18

-7.27

-5.09
5 EERIGMPRMH

2.51

-6.78

-4.27
6 YERIGMPRMH

2.5

-6.76

-4.26
7 EERIGMTRMK

2.15

-6.23

-4.08
8 EERIGMTRMH

2.54

-6.31

-3.77
9 EERIGHTRRH

2.31

-6.05

-3.74
10 EERMGHPRRH

2.82

-6.37

-3.55
11 EERIGMPRMK

2.22

-5.6

-3.38
12 EERMGMPRRH

2.64

-6.0

-3.36
13 YERIGRPRRH

2.54

-5.86

-3.32
14 YERIGHPRRH

2.3

-5.59

-3.29
15 EERIGHPRRH

3.07

-6.25

-3.18
16 EERIGRPRRH

3.18

-6.28

-3.1
17 YERIGMPRRH

2.52

-5.56

-3.04
18 EERIGMPMRH

3.15

-5.96

-2.81
19 EERIGHPRMK

2.35

-5.12

-2.77
20 YERIGMPRMK

2.36

-4.98

-2.62
21 EERIGMERRH

3.32

-5.93

-2.61
22 EERIGMPRRH

3.13

-5.59

-2.46
23 EERIGRPRMK

2.49

-4.92

-2.43
24 EERIGMTRRH

3.44

-5.6

-2.16
25 YERIGMPRRK

2.14

-3.82

-1.68
26 EERIGRPRRK

3.24

-4.73

-1.49
27 EERIGMTRRK

2.87

-4.24

-1.37
28 EERIGMPRRK

3.21

-4.54

-1.33
29 EERMGMPRRK

2.31

-3.33

-1.02
30 EERIGHPRRK

3.03

-3.44

-0.41

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

  Comments or questions on the site? Send a mail to adandatabase@umh.es                                                             DISCLAIMER