Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1RUW-5.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
A
A
A
A
A
A
 A A A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 1.464 ΔGbinding -1.333
TOTAL
 0.131
Backbone Hb -1.275 Cis_bond 0.000
Sidechain Hb -1.275 Torsional clash 1.321
Van der Waals -5.473 Backbone clash 0.262
Electrostatics -0.396 Helix dipole 0.000
Solvation Polar 5.843 Water bridges 0.000
Solvation Hyd -7.730 Disulfide 0.000
VdW clashes 4.235 Electrost. Kon -0.470
Entropy sc 0.973 Part.cov.bonds 0.000
Entropy mc

2.913

 ΔGstability

6.757
       

Predicted ligand sequences for model [MYO5_1RUW-5.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1RUW-5.PDB  

(data)
# Predicted Sequences Value Calculate
1 RRNRHFWDHG 0.0
2 RRNRHFWDPG 0.01
3 RRNRHFWPHG 0.06
4 RRNRHFWPPG 0.07
5 RRRRHFWDHG 0.1
6 RRRRHFWDPG 0.11
7 RRRRHFWPHG 0.16
8 RRRRHFWPPG 0.17
9 RRFRHFWDHG 0.17
10 RRFRHFWDPG 0.18
11 RRNRHFWDKG 0.19
12 RRFRHFWPHG 0.23
13 RRFRHFWPPG 0.24
14 RRNRHFWPKG 0.25
15 RRRRHFWDKG 0.29
16 RRNRHFWRHG 0.32
17 RRNRHFWRPG 0.33
18 RRNRHFWDHM 0.34
19 RRRRHFWPKG 0.35
20 RRNRHFWDPM 0.35
21 RRFRHFWDKG 0.36
22 RRNRHFWPHM 0.4
23 RRNRHFWPPM 0.41
24 RRNRHFFDHG 0.41
25 RRNRHFFDPG 0.42
26 RRFRHFWPKG 0.42
27 RRRRHFWRHG 0.42
28 RRRRHFWRPG 0.43
29 RRNRHFWDHF 0.43
30 RRRRHFWDHM 0.44
31 RRNRHFWDPF 0.44
32 RRRRHFWDPM 0.45
33 RRNRHFFPHG 0.47
34 RRNRHFFPPG 0.48
35 RRFRHFWRHG 0.49
36 RRNRHRWDHG 0.49
37 RRNRHFWPHF 0.49
38 RRFRHFWRPG 0.5
39 RRNRHFWPPF 0.5
40 RRRRHFWPHM 0.5
41 RRNRHRWDPG 0.5
42 RRRRHFWPPM 0.51
43 RRRRHFFDHG 0.51
44 RRFRHFWDHM 0.51
45 RRNRHFWRKG 0.51
46 RRNRHFWDKM 0.52
47 RRRRHFFDPG 0.52
48 RRFRHFWDPM 0.52
49 RRRRHFWDHF 0.53
50 RRRRHFWDPF 0.54
51 RRNRHRWPHG 0.55
52 RRNRHRWPPG 0.56
53 RRRRHFFPHG 0.57
54 RRFRHFWPHM 0.57
55 RRRRHFFPPG 0.58
56 RRFRHFFDHG 0.58
57 RRNRHFWPKM 0.58
58 RRFRHFWPPM 0.58
59 RRFRHFFDPG 0.59
60 RRRRHRWDHG 0.59
61 RRRRHFWPHF 0.59
62 RRNRHFFDKG 0.59
63 RRRRHFWPPF 0.6
64 RRRRHRWDPG 0.6
65 RRFRHFWDHF 0.6
66 RRRRHFWRKG 0.61
67 RRFRHFWDPF 0.61
68 RRRRHFWDKM 0.62
69 RRNRHFWDKF 0.62
70 RRFRHFFPHG 0.64
71 RRFRHFFPPG 0.65
72 RRNRHFFPKG 0.65
73 RRRRHRWPHG 0.65
74 RRNRHFWRHM 0.66
75 RRRRHRWPPG 0.66
76 RRFRHFWPHF 0.66
77 RRFRHRWDHG 0.66
78 RRFRHRWDPG 0.67
79 RRFRHFWPPF 0.67
80 RRNRHFWRPM 0.67
81 RRNRHRWDKG 0.68
82 RRNRHFWPKF 0.68
83 RRFRHFWRKG 0.68
84 RRRRHFWPKM 0.69
85 RRRRHFFDKG 0.7
86 RRFRHFWDKM 0.7
87 RRRRHFWDKF 0.72
88 RRFRHRWPHG 0.72
89 RRFRHRWPPG 0.73
90 RRNRHFFRHG 0.73
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RRRRHFWPPG

3.38

-7.37

-3.99
2 RRRRHFWPHG

3.26

-6.72

-3.46
3 RRRRHFWDHG

2.67

-6.06

-3.39
4 RRRRHFWRPG

2.93

-6.28

-3.35
5 RRNRHFWRPG

3.11

-6.45

-3.34
6 RRNRHFWPPG

3.2

-6.24

-3.04
7 RRRRHFWRHG

3.26

-6.26

-3.0
8 RRNRHFWDKG

2.74

-5.67

-2.93
9 RRRRHFWDPG

3.5

-6.36

-2.86
10 RRNRHFWPKG

4.31

-7.14

-2.83
11 RRFRHFWPPG

3.32

-6.04

-2.72
12 RRFRHFWDPG

3.39

-6.03

-2.64
13 RRNRHFFDPG

4.0

-6.58

-2.58
14 RRNRHFWDPG

2.98

-5.55

-2.57
15 RRNRHFWPHG

3.4

-5.96

-2.56
16 RRNRHFWDHG

3.8

-6.31

-2.51
17 RRFRHFWDHG

3.22

-5.7

-2.48
18 RRFRHFWPKG

3.53

-5.89

-2.36
19 RRFRHFWPHG

4.23

-6.5

-2.27
20 RRFRHFWDKG

3.41

-5.68

-2.27
21 RRRRHFWPKG

3.3

-5.41

-2.11
22 RRNRHFFDHG

4.49

-6.57

-2.08
23 RRNRHFWRHG

3.61

-5.47

-1.86
24 RRRRHFWDKG

3.56

-5.31

-1.75
25 RRNRHFWDHF

4.4

-4.36

0.04
26 RRNRHFWPPM

4.41

-4.08

0.33
27 RRNRHFWDPM

4.44

-3.94

0.5
28 RRNRHFWPHM

4.96

-3.67

1.29
29 RRRRHFWDHM

5.0

-3.68

1.32
30 RRNRHFWDHM

4.52

-2.77

1.75

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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