Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1RUW-26.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala A
A
A
 A
A
A
 A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 4.040 ΔGbinding 0.279
TOTAL
 4.319
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.413
Van der Waals -3.658 Backbone clash 0.009
Electrostatics 0.242 Helix dipole 0.000
Solvation Polar 4.554 Water bridges 0.000
Solvation Hyd -4.581 Disulfide 0.000
VdW clashes 1.169 Electrost. Kon 0.322
Entropy sc 0.411 Part.cov.bonds 0.000
Entropy mc

2.681

 ΔGstability

7.580
       

Predicted ligand sequences for model [MYO5_1RUW-26.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1RUW-26.PDB  

(data)
# Predicted Sequences Value Calculate
1 DRRKRRFPW 0.0
2 DDRKRRFPW 0.01
3 RRRKRRFPW 0.01
4 RDRKRRFPW 0.02
5 DRRKRRPPW 0.04
6 RRRKRRPPW 0.05
7 DDRKRRPPW 0.05
8 RDRKRRPPW 0.06
9 DRRKRKFPW 0.07
10 RRRKRKFPW 0.08
11 DDRKRKFPW 0.08
12 RDRKRKFPW 0.09
13 DRRKHRFPW 0.11
14 DRRKRKPPW 0.11
15 RRRKRKPPW 0.12
16 RRRKHRFPW 0.12
17 DDRKHRFPW 0.12
18 DDRKRKPPW 0.12
19 RDRKRKPPW 0.13
20 RDRKHRFPW 0.14
21 DRRMRRFPW 0.14
22 DRRKPRFPW 0.14
23 DDRMRRFPW 0.15
24 RRRKPRFPW 0.15
25 RRRMRRFPW 0.15
26 DDRKPRFPW 0.15
27 DRRRRRFPW 0.15
28 DRRKHRPPW 0.15
29 DDRKHRPPW 0.16
30 RDRKPRFPW 0.16
31 RRRKHRPPW 0.16
32 RRRRRRFPW 0.16
33 DDRRRRFPW 0.16
34 RDRRRRFPW 0.17
35 RDRMRRFPW 0.17
36 RDRKHRPPW 0.17
37 DRRKHKFPW 0.18
38 DRRKPRPPW 0.18
39 DRRMRRPPW 0.18
40 DRRRRRPPW 0.19
41 RRRKPRPPW 0.19
42 RRRMRRPPW 0.19
43 DDRMRRPPW 0.19
44 DDRKPRPPW 0.19
45 RRRKHKFPW 0.2
46 RRRRRRPPW 0.2
47 DRRKRRFEW 0.2
48 RDRKPRPPW 0.2
49 DDRRRRPPW 0.2
50 DERKRRFPW 0.2
51 DDRKHKFPW 0.2
52 RDRMRRPPW 0.2
53 RDRKHKFPW 0.21
54 DRRKPKFPW 0.21
55 RERKRRFPW 0.21
56 DRRMRKFPW 0.21
57 RDRRRRPPW 0.21
58 RRRKRRFEW 0.22
59 DDRKPKFPW 0.22
60 DDRKRRFEW 0.22
61 DRRRRKFPW 0.22
62 DRRKHKPPW 0.22
63 DRRKRRFRW 0.22
64 RRRKPKFPW 0.22
65 RDRKPKFPW 0.23
66 DDRKRRFRW 0.23
67 DDRRRKFPW 0.23
68 RDRKRRFEW 0.23
69 RRRKRRFRW 0.23
70 DDRKHKPPW 0.23
71 RRRKHKPPW 0.23
72 DDRMRKFPW 0.23
73 RRRRRKFPW 0.23
74 RRRMRKFPW 0.23
75 RDRKRRFRW 0.24
76 RDRMRKFPW 0.24
77 DRRKRRPEW 0.24
78 RDRKHKPPW 0.24
79 RDRRRKFPW 0.24
80 DERKRRPPW 0.24
81 RRRKRRPEW 0.25
82 DRRKPKPPW 0.25
83 RERKRRPPW 0.25
84 DDRKRRPEW 0.25
85 DRRMRKPPW 0.25
86 DRRKRRPRW 0.26
87 RRRMRKPPW 0.26
88 RRRKPKPPW 0.26
89 DRRRHRFPW 0.26
90 DDRMRKPPW 0.26
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 DRRKHRFPW

4.63

-8.63

-4.0
2 DRRMRRFPW

4.7

-8.54

-3.84
3 DRRKPRFPW

4.61

-7.64

-3.03
4 DDRKRRFPW

4.78

-7.74

-2.96
5 DRRRRRFPW

4.83

-7.67

-2.84
6 DRRKHRPPW

4.69

-7.36

-2.67
7 RRRKRKPPW

4.29

-6.81

-2.52
8 RRRKRRFPW

4.84

-7.12

-2.28
9 RRRKRKFPW

4.94

-7.21

-2.27
10 RRRMRRFPW

4.8

-6.96

-2.16
11 DRRKRRFPW

5.18

-7.32

-2.14
12 DRRKRKFPW

5.16

-7.25

-2.09
13 RRRKPRFPW

4.65

-6.7

-2.05
14 RRRKHRFPW

5.05

-7.04

-1.99
15 DDRKRRPPW

4.47

-6.39

-1.92
16 RDRKPRFPW

4.81

-6.64

-1.83
17 RRRKRRPPW

5.1

-6.85

-1.75
18 DDRKRKPPW

4.36

-6.02

-1.66
19 DRRKRRPPW

2.38

-3.94

-1.56
20 RDRKRRPPW

4.86

-6.35

-1.49
21 DDRMRRFPW

4.44

-5.88

-1.44
22 DRRKRKPPW

4.51

-5.8

-1.29
23 DDRKHRPPW

4.29

-5.56

-1.27
24 DDRKRKFPW

4.34

-5.54

-1.2
25 DDRKPRFPW

4.28

-5.42

-1.14
26 DDRKHRFPW

4.57

-5.26

-0.69
27 RDRKRRFPW

4.41

-4.92

-0.51
28 RDRKRKPPW

4.49

-4.82

-0.33
29 RDRKHRFPW

4.57

-4.66

-0.09
30 RDRKRKFPW

4.65

-4.26

0.39

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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