Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1RUW-2.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
A
A
A
A
A
A
 A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.531 ΔGbinding 0.527
TOTAL
 1.058
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.750
Van der Waals -4.795 Backbone clash 0.060
Electrostatics -0.245 Helix dipole 0.000
Solvation Polar 5.238 Water bridges -0.003
Solvation Hyd -6.815 Disulfide 0.000
VdW clashes 4.327 Electrost. Kon -0.313
Entropy sc 0.826 Part.cov.bonds 0.000
Entropy mc

2.833

 ΔGstability

6.163
       

Predicted ligand sequences for model [MYO5_1RUW-2.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1RUW-2.PDB  

(data)
# Predicted Sequences Value Calculate
1 FRRRMFRDRW 0.0
2 FRKRMFRDRW 0.0
3 FRPRMFRDRW 0.04
4 FRKRMFRPRW 0.18
5 FRKRRFRDRW 0.18
6 FRRRRFRDRW 0.18
7 FRRRMFRPRW 0.18
8 FRPRMFRPRW 0.21
9 FRPRRFRDRW 0.22
10 FRKRMFRDMW 0.23
11 FRRRMFRDMW 0.23
12 FRRRKFRDRW 0.24
13 FRKRKFRDRW 0.24
14 FRPRMFRDMW 0.26
15 FRPRKFRDRW 0.28
16 HRRRMFRDRW 0.31
17 HRKRMFRDRW 0.31
18 FRRRMFRRRW 0.32
19 FRKRMFRRRW 0.32
20 HRPRMFRDRW 0.34
21 FRPRMFRRRW 0.35
22 FRKRRFRPRW 0.36
23 FRRRRFRPRW 0.36
24 FRKRMFRPMW 0.4
25 FRPRRFRPRW 0.4
26 FRRRMFRPMW 0.41
27 FRKRRFRDMW 0.41
28 FRRRRFRDMW 0.41
29 FRRRMFRDPW 0.42
30 FRRRKFRPRW 0.42
31 FRKRKFRPRW 0.42
32 FRKRMFRDPW 0.42
33 FRPRMFRPMW 0.44
34 FRPRRFRDMW 0.45
35 FRPRMFRDPW 0.45
36 FRPRKFRPRW 0.45
37 FRRRKFRDMW 0.47
38 FRKRKFRDMW 0.47
39 HRRRRFRDRW 0.49
40 HRKRRFRDRW 0.49
41 HRRRMFRPRW 0.49
42 HRKRMFRPRW 0.49
43 FRKRRFRRRW 0.5
44 FRRRRFRRRW 0.5
45 FRPRKFRDMW 0.51
46 HRPRMFRPRW 0.52
47 HRPRRFRDRW 0.53
48 HRKRMFRDMW 0.54
49 FRPRRFRRRW 0.54
50 HRRRMFRDMW 0.54
51 FRKRMFRRMW 0.54
52 HRRRKFRDRW 0.55
53 HRKRKFRDRW 0.55
54 FRRRMFRRMW 0.55
55 FRRRKFRRRW 0.56
56 FRKRKFRRRW 0.56
57 HRPRMFRDMW 0.57
58 FRPRMFRRMW 0.58
59 FRKRRFRPMW 0.59
60 HRPRKFRDRW 0.59
61 FRRRRFRPMW 0.59
62 FRRRMFRPPW 0.59
63 FRPRKFRRRW 0.59
64 FRKRMFRPPW 0.59
65 FRRRRFRDPW 0.6
66 FRKRRFRDPW 0.6
67 FRPRRFRPMW 0.62
68 FRPRMFRPPW 0.63
69 HRRRMFRRRW 0.63
70 HRKRMFRRRW 0.63
71 FRPRRFRDPW 0.64
72 FRKRKFRPMW 0.65
73 FRRRKFRPMW 0.65
74 FRKRKFRDPW 0.66
75 FRRRKFRDPW 0.66
76 HRPRMFRRRW 0.66
77 HRKRRFRPRW 0.67
78 HRRRRFRPRW 0.67
79 FRPRKFRPMW 0.68
80 FRPRKFRDPW 0.69
81 HRPRRFRPRW 0.7
82 HRRRMFRPMW 0.71
83 HRKRMFRPMW 0.71
84 HRKRRFRDMW 0.72
85 HRRRRFRDMW 0.72
86 FRRRRFRRMW 0.73
87 HRRRMFRDPW 0.73
88 HRKRMFRDPW 0.73
89 HRRRKFRPRW 0.73
90 FRRRMFRRPW 0.73
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 FRRRMFRDPW

2.43

-7.87

-5.44
2 FRRRRFRDMW

3.29

-6.51

-3.22
3 FRRRMFRDMW

3.54

-6.71

-3.17
4 FRRRRFRPRW

3.64

-6.77

-3.13
5 FRPRRFRPRW

3.59

-6.49

-2.9
6 FRRRRFRDRW

3.59

-6.45

-2.86
7 FRKRRFRDMW

3.49

-6.32

-2.83
8 FRPRMFRDMW

3.79

-6.37

-2.58
9 FRRRMFRRRW

3.85

-6.41

-2.56
10 FRPRMFRPRW

3.58

-6.14

-2.56
11 FRRRMFRPMW

3.44

-5.94

-2.5
12 FRKRRFRDRW

3.94

-5.89

-1.95
13 FRKRMFRDMW

3.89

-5.79

-1.9
14 HRRRMFRDRW

3.61

-5.47

-1.86
15 HRKRMFRDRW

3.61

-5.35

-1.74
16 FRPRMFRRRW

3.67

-5.35

-1.68
17 FRKRRFRPRW

3.27

-4.83

-1.56
18 FRKRMFRPMW

3.21

-4.76

-1.55
19 FRRRKFRDRW

3.76

-5.27

-1.51
20 FRKRKFRDRW

2.85

-4.26

-1.41
21 FRKRMFRRRW

3.78

-5.18

-1.4
22 FRPRKFRDRW

3.63

-4.86

-1.23
23 FRRRMFRPRW

3.66

-4.89

-1.23
24 HRPRMFRDRW

3.68

-4.86

-1.18
25 FRKRMFRDRW

4.56

-5.57

-1.01
26 FRRRKFRPRW

3.57

-4.52

-0.95
27 FRKRMFRPRW

3.96

-4.41

-0.45
28 FRPRMFRDRW

2.97

-3.13

-0.16
29 FRPRRFRDRW

3.52

-3.59

-0.07
30 FRRRMFRDRW

5.58

-4.3

1.28

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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