Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1R6S-28.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
A
A
A
 A
A
A
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 3.549 ΔGbinding 32.805
TOTAL
 36.354
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.514
Van der Waals -5.443 Backbone clash 3.644
Electrostatics 0.251 Helix dipole 0.000
Solvation Polar 6.916 Water bridges 0.053
Solvation Hyd -6.983 Disulfide 0.000
VdW clashes 33.713 Electrost. Kon 0.289
Entropy sc 0.896 Part.cov.bonds 0.000
Entropy mc

3.876

 ΔGstability

46.725
       

Predicted ligand sequences for model [MYO5_1R6S-28.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1R6S-28.PDB  

(data)
# Predicted Sequences Value Calculate
1 RMPIPRRKGR 0.0
2 RMRIPRRKGR 0.0
3 RMPIPRRPGR 0.02
4 RMRIPRRPGR 0.02
5 RMPIPRRLGR 0.02
6 RMRIPRRLGR 0.03
7 RMHIPRRKGR 0.08
8 RMHIPRRLGR 0.1
9 RMHIPRRPGR 0.1
10 RMRIFRRKGR 0.1
11 RMPIFRRKGR 0.1
12 RMPIFRRPGR 0.12
13 RMPIFRRLGR 0.12
14 RMRIFRRPGR 0.12
15 RMRIFRRLGR 0.12
16 RMHIFRRKGR 0.17
17 RMHIFRRLGR 0.2
18 RMHIFRRPGR 0.2
19 RMPIPHRKGR 0.25
20 RMRIPHRKGR 0.25
21 RMPIPHRPGR 0.27
22 RMRIPHRPGR 0.28
23 RMRIPFRKGR 0.28
24 RMRIPHRLGR 0.28
25 RMPIPHRLGR 0.28
26 RMPIPFRKGR 0.28
27 RMRIPFRPGR 0.3
28 RMPIPFRPGR 0.3
29 RMPIPFRLGR 0.3
30 RMRIPFRLGR 0.3
31 RMHIPHRKGR 0.33
32 RMHIPHRLGR 0.35
33 RMRIFHRKGR 0.35
34 RMPIFHRKGR 0.35
35 RMHIPHRPGR 0.35
36 RMHIPFRKGR 0.36
37 RMRIFHRLGR 0.37
38 RMPIFFRKGR 0.37
39 RMPIFHRPGR 0.37
40 RMPIFHRLGR 0.37
41 RMRIFHRPGR 0.37
42 RMRIFFRKGR 0.38
43 RMHIPFRPGR 0.38
44 RMHIPFRLGR 0.38
45 RMPIFFRPGR 0.39
46 RMRIFFRPGR 0.4
47 RMPLPRRKGR 0.4
48 RMRIFFRLGR 0.4
49 RMPIFFRLGR 0.4
50 RMRLPRRKGR 0.4
51 RMRLPRRLGR 0.42
52 RMPLPRRLGR 0.42
53 RMRLPRRPGR 0.42
54 RMPLPRRPGR 0.42
55 RMHIFHRKGR 0.43
56 RMHIFFRKGR 0.45
57 RMHIFHRLGR 0.45
58 RMHIFHRPGR 0.45
59 RMHIFFRPGR 0.47
60 RMPIMRRKGR 0.48
61 RMHLPRRKGR 0.48
62 RMHIFFRLGR 0.48
63 RMRIMRRKGR 0.49
64 RMPLFRRKGR 0.49
65 RMHLPRRPGR 0.5
66 RMRLFRRKGR 0.5
67 RMHLPRRLGR 0.5
68 RMRIMRRPGR 0.51
69 RMRIMRRLGR 0.51
70 RMPIMRRLGR 0.51
71 RMPIMRRPGR 0.51
72 RMRLFRRPGR 0.52
73 RMRLFRRLGR 0.52
74 RMPLFRRLGR 0.52
75 RMPLFRRPGR 0.52
76 RMHIMRRKGR 0.56
77 RMHLFRRKGR 0.57
78 RMHIMRRPGR 0.58
79 RMHLFRRPGR 0.59
80 RMHIMRRLGR 0.59
81 RMHLFRRLGR 0.6
82 RMPLPHRKGR 0.65
83 RMRLPHRKGR 0.65
84 RMPLPHRLGR 0.67
85 RMRLPHRPGR 0.67
86 RMPLPHRPGR 0.67
87 RMRLPHRLGR 0.68
88 RMPLPFRKGR 0.68
89 RMRLPFRKGR 0.68
90 RMRLPFRLGR 0.7
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RMPIPRRKGR

2.95

-4.05

-1.1
2 RMRIPFRKGR

2.19

-2.69

-0.5
3 RMPIPFRLGR

2.58

-3.08

-0.5
4 RMPIPFRKGR

2.28

-2.78

-0.5
5 RMPIFRRLGR

2.16

-2.63

-0.47
6 RMRIPFRLGR

2.67

-3.11

-0.44
7 RMHIPRRKGR

2.99

-3.21

-0.22
8 RMHIFRRKGR

2.32

-2.52

-0.2
9 RMRIFRRLGR

2.45

-2.62

-0.17
10 RMRIPRRLGR

1.93

-2.0

-0.07
11 RMHIFRRLGR

2.58

-2.44

0.14
12 RMRIFRRKGR

2.69

-2.39

0.3
13 RMRIPHRKGR

3.2

-2.77

0.43
14 RMPIFRRKGR

2.75

-2.26

0.49
15 RMPIPRRLGR

3.02

-2.46

0.56
16 RMHIPRRLGR

2.86

-2.25

0.61
17 RMHIPRRPGR

3.12

-2.46

0.66
18 RMPIFRRPGR

3.26

-2.5

0.76
19 RMRIPRRKGR

3.01

-2.24

0.77
20 RMPIPFRPGR

3.4

-2.49

0.91
21 RMRIPRRPGR

3.18

-2.23

0.95
22 RMRIFRRPGR

3.06

-2.07

0.99
23 RMHIFRRPGR

3.2

-2.2

1.0
24 RMRIPFRPGR

3.14

-2.12

1.02
25 RMPIPRRPGR

2.99

-1.96

1.03
26 RMRIPHRLGR

2.23

-1.1

1.13
27 RMRIPHRPGR

2.78

-1.5

1.28
28 RMPIPHRLGR

2.66

-1.24

1.42
29 RMPIPHRKGR

2.5

-0.91

1.59
30 RMPIPHRPGR

3.18

-1.34

1.84

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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