Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1R6S-26.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala
A
 A
A
A
A
A
 A A A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 3.025 ΔGbinding -0.701
TOTAL
 2.324
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.776
Van der Waals -3.839 Backbone clash 0.008
Electrostatics 0.219 Helix dipole 0.000
Solvation Polar 4.643 Water bridges 0.000
Solvation Hyd -4.788 Disulfide 0.000
VdW clashes 0.008 Electrost. Kon 0.296
Entropy sc 0.433 Part.cov.bonds 0.000
Entropy mc

2.826

 ΔGstability

10.536
       

Predicted ligand sequences for model [MYO5_1R6S-26.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1R6S-26.PDB  

(data)
# Predicted Sequences Value Calculate
1 DDRHRRPPY 0.0
2 DDRHRRFPY 0.02
3 DDRHKRPPY 0.04
4 DDRHKRFPY 0.05
5 DRRHRRPPY 0.06
6 DDRHRRPPR 0.07
7 DRRHRRFPY 0.08
8 DDRHRRFPR 0.09
9 DDRHKRPPR 0.1
10 DRRHKRPPY 0.1
11 DRRHKRFPY 0.11
12 DDRHHRPPY 0.12
13 DDRHKRFPR 0.12
14 DRRHRRPPR 0.13
15 DDRHHRFPY 0.13
16 DRRHRRFPR 0.15
17 DRRHKRPPR 0.16
18 DRRHHRPPY 0.17
19 DDRHHRPPR 0.18
20 DRRHKRFPR 0.18
21 DDRHRRPRY 0.19
22 DRRHHRFPY 0.19
23 DDRHHRFPR 0.2
24 DDRHRRFRY 0.21
25 DDRHKRPRY 0.23
26 DERHRRPPY 0.24
27 DRRHHRPPR 0.24
28 DRRHRRPRY 0.25
29 DDRHKRFRY 0.25
30 DERHRRFPY 0.26
31 DDRHRRPRR 0.26
32 DRRHHRFPR 0.26
33 DRRHRRFRY 0.27
34 DDRHRRPSY 0.28
35 DDRHRRFRR 0.28
36 DERHKRPPY 0.28
37 DRRHKRPRY 0.29
38 DERHKRFPY 0.3
39 DDRHKRPRR 0.3
40 DDRHRRFSY 0.3
41 DRRHKRFRY 0.31
42 DERHRRPPR 0.31
43 DDRHHRPRY 0.31
44 DDRHKRPSY 0.31
45 DRRHRRPRR 0.32
46 DDRHKRFRR 0.32
47 DERHRRFPR 0.33
48 DDRHKRFSY 0.33
49 DDRHHRFRY 0.33
50 DRRHRRPSY 0.34
51 DRRHRRFRR 0.34
52 DDRHRRPSR 0.35
53 DERHKRPPR 0.35
54 DRRHRRFSY 0.36
55 DERHHRPPY 0.36
56 DRRHKRPRR 0.36
57 DDRHRRRPY 0.36
58 DRRHKRPSY 0.37
59 DRRHHRPRY 0.37
60 DERHKRFPR 0.37
61 DDRHRRFSR 0.37
62 DRRHKRFRR 0.38
63 DERHHRFPY 0.38
64 DDRHHRPRR 0.38
65 DDRHKRPSR 0.38
66 DRRHHRFRY 0.39
67 DRRHKRFSY 0.39
68 DDRHHRPSY 0.39
69 DDRHKRRPY 0.39
70 DDRHKRFSR 0.4
71 DDRHHRFRR 0.4
72 DRRHRRPSR 0.41
73 DDRHHRFSY 0.41
74 DRRHRRRPY 0.42
75 DRRHRRFSR 0.43
76 DERHHRPPR 0.43
77 DDRHRRRPR 0.43
78 DRRHKRPSR 0.44
79 DRRHHRPRR 0.44
80 DERHRRPRY 0.44
81 DRRHHRPSY 0.45
82 DERHHRFPR 0.45
83 DRRHKRRPY 0.45
84 DRRHHRFRR 0.46
85 DRRHKRFSR 0.46
86 DERHRRFRY 0.46
87 DDRHHRPSR 0.46
88 DDRHKRRPR 0.46
89 DERHKRPRY 0.47
90 DRRHHRFSY 0.47
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 DRRHHRPPY

2.55

-9.11

-6.56
2 DDRHRRFPY

2.24

-8.45

-6.21
3 DRRHRRFPY

2.55

-8.72

-6.17
4 DRRHHRFPY

2.7

-8.87

-6.17
5 DRRHKRPPY

2.72

-8.74

-6.02
6 DRRHRRPRY

2.84

-8.73

-5.89
7 DRRHRRPPY

2.91

-8.79

-5.88
8 DDRHKRPRY

3.15

-8.78

-5.63
9 DRRHHRPPR

3.2

-8.78

-5.58
10 DDRHHRFPY

3.01

-8.17

-5.16
11 DRRHRRPPR

3.06

-8.13

-5.07
12 DDRHKRPPY

3.1

-8.15

-5.05
13 DDRHRRFRY

2.87

-7.76

-4.89
14 DDRHKRPPR

2.61

-7.42

-4.81
15 DDRHKRFRY

2.96

-7.75

-4.79
16 DRRHKRFPR

2.78

-7.43

-4.65
17 DRRHKRPPR

3.51

-8.14

-4.63
18 DERHRRFPY

2.62

-7.12

-4.5
19 DRRHRRFPR

3.55

-7.88

-4.33
20 DERHRRPPY

2.55

-6.76

-4.21
21 DDRHRRPPY

2.73

-6.92

-4.19
22 DDRHHRPPY

2.77

-6.9

-4.13
23 DRRHKRFPY

2.48

-6.58

-4.1
24 DDRHRRPRY

2.84

-6.79

-3.95
25 DDRHKRFPR

3.02

-6.94

-3.92
26 DDRHKRFPY

3.12

-7.0

-3.88
27 DDRHRRPPR

2.56

-6.26

-3.7
28 DDRHHRPPR

2.58

-5.88

-3.3
29 DDRHHRFPR

2.55

-5.19

-2.64
30 DDRHRRFPR

3.35

-4.95

-1.6

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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