Predicted ligand sequences (modelled structure)


ADAN-name: MYO5_1R6S-13.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8
poly-Ala
A
 A
A
A
 A A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 1.543 ΔGbinding -1.255
TOTAL
 0.288
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.701
Van der Waals -3.380 Backbone clash 2.313
Electrostatics 0.106 Helix dipole 0.000
Solvation Polar 3.649 Water bridges -0.012
Solvation Hyd -4.292 Disulfide 0.000
VdW clashes 0.346 Electrost. Kon 0.122
Entropy sc 0.611 Part.cov.bonds 0.000
Entropy mc

2.170

 ΔGstability

8.696
       

Predicted ligand sequences for model [MYO5_1R6S-13.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO5_1R6S-13.PDB  

(data)
# Predicted Sequences Value Calculate
1 RKPRFPFH 0.0
2 RKRRFPFH 0.08
3 RKKRFPFH 0.11
4 RKPRFFFH 0.21
5 RFPRFPFH 0.24
6 RKPRFPFR 0.25
7 RKPRFPFT 0.28
8 RKRRFFFH 0.29
9 RLPRFPFH 0.29
10 RKPRPPFH 0.31
11 RFRRFPFH 0.32
12 RKKRFFFH 0.32
13 RKRRFPFR 0.33
14 RFKRFPFH 0.34
15 RKPRFIFH 0.34
16 RKKRFPFR 0.35
17 RKRRFPFT 0.36
18 RLRRFPFH 0.37
19 RKKRFPFT 0.39
20 RKRRPPFH 0.39
21 RLKRFPFH 0.4
22 RKRRFIFH 0.42
23 RKKRPPFH 0.42
24 RFPRFFFH 0.45
25 RKKRFIFH 0.45
26 RKPRFFFR 0.46
27 RKPRYPFH 0.48
28 RFPRFPFR 0.49
29 RKPRFFFT 0.49
30 RLPRFFFH 0.51
31 RFPRFPFT 0.52
32 RKPRPFFH 0.53
33 RFRRFFFH 0.53
34 RKRRFFFR 0.54
35 RLPRFPFR 0.54
36 RFPRPPFH 0.55
37 RFKRFFFH 0.56
38 RFRRFPFR 0.56
39 RKPRPPFR 0.56
40 RKRRYPFH 0.56
41 RKRRFFFT 0.57
42 RLPRFPFT 0.57
43 RKKRFFFR 0.57
44 RFPRFIFH 0.58
45 RLRRFFFH 0.58
46 RKPRPPFT 0.59
47 RFKRFPFR 0.59
48 RKKRYPFH 0.59
49 RKPRFIFR 0.59
50 RFRRFPFT 0.6
51 RKKRFFFT 0.6
52 RLPRPPFH 0.61
53 RLKRFFFH 0.61
54 RKRRPFFH 0.61
55 RLRRFPFR 0.62
56 RFKRFPFT 0.62
57 RKPRFIFT 0.62
58 RFRRPPFH 0.63
59 RKKRPFFH 0.63
60 RLPRFIFH 0.64
61 RKRRPPFR 0.64
62 RLRRFPFT 0.65
63 RLKRFPFR 0.65
64 RKPRPIFH 0.66
65 RFRRFIFH 0.66
66 RFKRPPFH 0.66
67 RKRRFIFR 0.67
68 RKRRPPFT 0.67
69 RKKRPPFR 0.67
70 RLKRFPFT 0.68
71 RLRRPPFH 0.69
72 RFKRFIFH 0.69
73 RKRRFIFT 0.7
74 RFPRFFFR 0.7
75 RKPRYFFH 0.7
76 RKKRFIFR 0.7
77 RKKRPPFT 0.7
78 RLRRFIFH 0.71
79 RLKRPPFH 0.71
80 RFPRYPFH 0.72
81 RFPRFFFT 0.73
82 RKKRFIFT 0.73
83 RKPRYPFR 0.73
84 RKRRPIFH 0.74
85 RLKRFIFH 0.74
86 RLPRFFFR 0.75
87 RKPRYPFT 0.76
88 RKKRPIFH 0.76
89 RFPRPFFH 0.77
90 RKPRPFFR 0.78
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RKPRYPFH

2.24

-9.65

-7.41
2 RKRRFPFH

1.99

-9.4

-7.41
3 RKKRFPFH

3.43

-10.83

-7.4
4 RKKRPPFH

2.37

-9.45

-7.08
5 RLKRFPFH

2.3

-9.28

-6.98
6 RKPRPPFH

3.04

-9.91

-6.87
7 RKRRPPFH

3.05

-9.82

-6.77
8 RFPRFPFH

3.27

-9.76

-6.49
9 RKPRFPFT

3.04

-9.46

-6.42
10 RKPRFIFH

2.11

-8.48

-6.37
11 RLPRFFFH

3.27

-9.53

-6.26
12 RFKRFPFH

3.2

-9.4

-6.2
13 RLPRFPFH

3.67

-9.82

-6.15
14 RKPRFPFH

3.04

-9.17

-6.13
15 RKRRFPFT

2.96

-9.06

-6.1
16 RKPRFPFR

3.4

-9.47

-6.07
17 RFPRFPFR

3.79

-9.83

-6.04
18 RKRRFPFR

3.06

-9.08

-6.02
19 RKRRFIFH

3.07

-9.07

-6.0
20 RFPRFFFH

3.23

-9.12

-5.89
21 RKKRFPFT

2.99

-8.87

-5.88
22 RLRRFPFH

2.91

-8.78

-5.87
23 RKPRFFFH

3.15

-8.98

-5.83
24 RKKRFPFR

3.22

-9.01

-5.79
25 RFRRFPFH

3.1

-8.79

-5.69
26 RKRRFFFH

2.99

-8.45

-5.46
27 RKKRFIFH

3.23

-8.64

-5.41
28 RKPRFFFT

3.48

-8.62

-5.14
29 RKKRFFFH

3.68

-8.65

-4.97
30 RKPRFFFR

3.0

-7.56

-4.56

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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