Predicted ligand sequences (modelled structure)


ADAN-name: MYO3_1YP5-6.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
 A
A
 A
A
A
 A
A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.705 ΔGbinding 3.513
TOTAL
 4.218
Backbone Hb 0.000 Cis_bond 0.000
Sidechain Hb 0.000 Torsional clash 1.144
Van der Waals -3.685 Backbone clash 3.516
Electrostatics 0.050 Helix dipole 0.000
Solvation Polar 3.960 Water bridges 0.000
Solvation Hyd -4.909 Disulfide 0.000
VdW clashes 3.804 Electrost. Kon 0.043
Entropy sc 0.300 Part.cov.bonds 0.000
Entropy mc

2.807

 ΔGstability

15.667
       

Predicted ligand sequences for model [MYO3_1YP5-6.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO3_1YP5-6.PDB  

(data)
# Predicted Sequences Value Calculate
1 HRRMGWMRPR 0.0
2 HPRMGWMRPR 0.05
3 HRRMGWWRPR 0.05
4 HRRMGWHRPR 0.06
5 HFRMGWMRPR 0.07
6 HRRMGFMRPR 0.09
7 HRRMGWMRPK 0.09
8 HPRMGWWRPR 0.1
9 HPRMGWHRPR 0.11
10 HFRMGWWRPR 0.12
11 HPRMGWMRPK 0.14
12 HPRMGFMRPR 0.14
13 HRRMGFWRPR 0.14
14 HRRMGWWRPK 0.14
15 HFRMGWHRPR 0.14
16 HRRMGWHRPK 0.16
17 HRRMGFHRPR 0.16
18 HRRMGYMRPR 0.17
19 HFRMGWMRPK 0.17
20 HFRMGFMRPR 0.17
21 HRRRGWMRPR 0.18
22 HRRMGFMRPK 0.19
23 HRIMGWMRPR 0.19
24 HPRMGFWRPR 0.19
25 HPRMGWWRPK 0.2
26 HRHMGWMRPR 0.21
27 HPRMGWHRPK 0.21
28 HPRMGFHRPR 0.21
29 HPRMGYMRPR 0.22
30 HRRMGYWRPR 0.22
31 HFRMGWWRPK 0.22
32 HFRMGFWRPR 0.22
33 HPRRGWMRPR 0.23
34 HFRMGFHRPR 0.23
35 HRRRGWWRPR 0.23
36 HFRMGWHRPK 0.23
37 HPRMGFMRPK 0.24
38 HPIMGWMRPR 0.24
39 HRRMGYHRPR 0.24
40 HRRMGFWRPK 0.24
41 HRIMGWWRPR 0.24
42 HRRRGWHRPR 0.25
43 HRIMGWHRPR 0.25
44 HRRMGFHRPK 0.25
45 HFRMGYMRPR 0.25
46 HFIMGWMRPR 0.26
47 HRRMGWMRMR 0.26
48 HFRMGFMRPK 0.26
49 HFRRGWMRPR 0.26
50 HRHMGWWRPR 0.27
51 HRRMGYMRPK 0.27
52 HPHMGWMRPR 0.27
53 HPRMGYWRPR 0.27
54 HRHMGWHRPR 0.28
55 HPRRGWWRPR 0.28
56 HRRRGWMRPK 0.28
57 HRIMGFMRPR 0.28
58 HRRRGFMRPR 0.28
59 HRIMGWMRPK 0.28
60 HFHMGWMRPR 0.29
61 HPIMGWWRPR 0.29
62 HPRMGYHRPR 0.29
63 HPRMGFWRPK 0.29
64 HPRRGWHRPR 0.3
65 HRRMGWMRRR 0.3
66 HPRMGFHRPK 0.3
67 HPIMGWHRPR 0.3
68 HRRMGWWRMR 0.3
69 HFRMGYWRPR 0.3
70 HRHMGFMRPR 0.31
71 HRHMGWMRPK 0.31
72 HPRMGWMRMR 0.31
73 HFRRGWWRPR 0.31
74 HFRMGYHRPR 0.31
75 HFRMGFWRPK 0.31
76 HFIMGWWRPR 0.31
77 HFRRGWHRPR 0.32
78 HRRMGWHRMR 0.32
79 HFRMGFHRPK 0.32
80 HPRMGYMRPK 0.32
81 HRRMGYWRPK 0.32
82 HFIMGWHRPR 0.32
83 YRRMGWMRPR 0.32
84 HPHMGWWRPR 0.32
85 HFRMGWMRMR 0.33
86 HRRMGYHRPK 0.33
87 HRIMGFWRPR 0.33
88 HPIMGFMRPR 0.33
89 HPIMGWMRPK 0.33
90 HPHMGWHRPR 0.33
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 HRRRGWMRPR

1.35

-6.41

-5.06
2 HPRMGWHRPK

1.32

-6.33

-5.01
3 HPRMGFMRPR

0.99

-5.86

-4.87
4 HFRMGWMRPK

1.26

-5.98

-4.72
5 HPRMGWMRPR

0.86

-5.58

-4.72
6 HRRMGWWRPK

1.96

-6.62

-4.66
7 HRRMGWMRPR

1.6

-6.26

-4.66
8 HPRMGYMRPR

1.21

-5.83

-4.62
9 HRRMGWHRPR

1.45

-6.06

-4.61
10 HPRMGWWRPK

1.79

-6.37

-4.58
11 HRRMGFMRPR

1.32

-5.89

-4.57
12 HPRMGWHRPR

0.91

-5.45

-4.54
13 HPRMGWWRPR

2.01

-6.41

-4.4
14 HPRMGWMRPK

1.02

-5.38

-4.36
15 HRRMGFMRPK

0.94

-5.28

-4.34
16 HFRMGWWRPR

2.08

-6.4

-4.32
17 HPRMGFHRPR

0.97

-5.27

-4.3
18 HRHMGWMRPR

1.49

-5.78

-4.29
19 HRRMGWHRPK

1.13

-5.36

-4.23
20 HPRMGFWRPR

1.9

-6.08

-4.18
21 HRRMGYMRPR

1.42

-5.59

-4.17
22 HFRMGWHRPR

1.3

-5.39

-4.09
23 HRIMGWMRPR

1.32

-5.37

-4.05
24 HFRMGFMRPR

1.02

-4.91

-3.89
25 HRRMGWMRPK

1.1

-4.93

-3.83
26 HRRMGYWRPR

2.02

-5.84

-3.82
27 HRRMGFWRPR

2.05

-5.66

-3.61
28 HFRMGWMRPR

1.22

-4.76

-3.54
29 HRRMGWWRPR

2.48

-5.77

-3.29
30 HRRMGFHRPR

1.49

-4.23

-2.74

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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