Predicted ligand sequences (modelled structure)


ADAN-name: MYO3_1YP5-5.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
 A
A
A
 A A A A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.221 ΔGbinding -2.962
TOTAL
 -2.741
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 1.378
Van der Waals -5.941 Backbone clash 0.217
Electrostatics -0.495 Helix dipole 0.000
Solvation Polar 6.615 Water bridges -0.074
Solvation Hyd -8.251 Disulfide 0.000
VdW clashes 1.310 Electrost. Kon -0.547
Entropy sc 0.854 Part.cov.bonds 0.000
Entropy mc

3.466

 ΔGstability

7.711
       

Predicted ligand sequences for model [MYO3_1YP5-5.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO3_1YP5-5.PDB  

(data)
# Predicted Sequences Value Calculate
1 FPRWPRRDHP 0.0
2 FPRWPRRPHP 0.01
3 FPRWPRREHP 0.01
4 FPRWDRRDHP 0.14
5 FPRWPFRDHP 0.14
6 FPRWPFREHP 0.14
7 FPRWDRREHP 0.15
8 FPRWDRRPHP 0.15
9 FPRWPFRPHP 0.15
10 FPRWMRREHP 0.18
11 FPRWMRRDHP 0.18
12 FPRWPRRDKP 0.18
13 FPRWPRREKP 0.19
14 FIRWPRRDHP 0.19
15 FPRWMRRPHP 0.19
16 FIRWPRREHP 0.2
17 FPRWPRRPKP 0.2
18 FIRWPRRPHP 0.2
19 FPRWPRWDHP 0.21
20 FPRWPRPDHP 0.22
21 FPRWPRWEHP 0.22
22 FPRWPRWPHP 0.22
23 FPRWPRPEHP 0.23
24 FPRWPRPPHP 0.23
25 FPRWDFRDHP 0.27
26 FPRWDFREHP 0.28
27 FFRWPRRDHP 0.29
28 FPRWDFRPHP 0.29
29 FFRWPRRPHP 0.3
30 FFRWPRREHP 0.3
31 FPRWMFRDHP 0.31
32 FPRWMFRPHP 0.32
33 FPRWDRRDKP 0.32
34 FPRWPFRDKP 0.32
35 FPRWMFREHP 0.32
36 FPRWPFRPKP 0.33
37 FPRWDRREKP 0.33
38 FIRWDRRDHP 0.33
39 FPRWPFREKP 0.33
40 FPRWDRRPKP 0.33
41 FIRWPFRDHP 0.33
42 FIRWPFREHP 0.33
43 FIRWDRRPHP 0.34
44 FPRWPFWDHP 0.34
45 FIRWPFRPHP 0.34
46 FIRWDRREHP 0.34
47 FPRWDRWDHP 0.35
48 FPRWPFWEHP 0.35
49 FPRWDRPDHP 0.36
50 FPRWPFPDHP 0.36
51 FPRWDRWEHP 0.36
52 FPRWMRRDKP 0.36
53 FPRWPFWPHP 0.36
54 FPRWPFPEHP 0.36
55 FPRWDRWPHP 0.36
56 FPRWMRRPKP 0.37
57 FPRWDRPEHP 0.37
58 FIRWMRRDHP 0.37
59 FPRWPFPPHP 0.37
60 FPRWDRPPHP 0.37
61 FPRWMRREKP 0.37
62 FIRWPRRDKP 0.38
63 FIRWPRREKP 0.38
64 FIRWMRREHP 0.38
65 FIRWMRRPHP 0.38
66 FPRFPRRDHP 0.39
67 FIRWPRRPKP 0.39
68 FPRWMRWDHP 0.39
69 FPRWPRWDKP 0.39
70 FPRFPRRPHP 0.4
71 FIRWPRWDHP 0.4
72 FPRFPRREHP 0.4
73 FPRWPRWEKP 0.4
74 FPRWMRWPHP 0.4
75 FPRWMRPDHP 0.4
76 FPRWMRWEHP 0.4
77 FIRWPRPDHP 0.41
78 FPRWPRWPKP 0.41
79 FPRWPRPEKP 0.41
80 FIRWPRWEHP 0.41
81 FPRWMRPEHP 0.41
82 FPRWMRPPHP 0.41
83 FIRWPRWPHP 0.41
84 FPRWPRPDKP 0.41
85 FIRWPRPEHP 0.42
86 FIRWPRPPHP 0.42
87 FPRWPRPPKP 0.42
88 FFRWPFRDHP 0.42
89 FFRWPFRPHP 0.43
90 FFRWDRRDHP 0.43
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 FPRWPRPDHP

1.27

-11.54

-10.27
2 FPRWPRREKP

1.83

-11.97

-10.14
3 FPRWPRWDHP

1.8

-11.63

-9.83
4 FPRWPRPEHP

1.19

-10.86

-9.67
5 FPRWPRRPKP

1.3

-10.61

-9.31
6 FPRWPFREHP

2.15

-11.2

-9.05
7 FPRWPRPPHP

1.33

-10.31

-8.98
8 FPRWPRREHP

1.38

-10.3

-8.92
9 FPRWDFREHP

2.09

-10.97

-8.88
10 FPRWDRREHP

1.42

-10.3

-8.88
11 FPRWPRRDKP

1.28

-9.97

-8.69
12 FPRWPRRPHP

1.11

-9.71

-8.6
13 FPRWPRRDHP

1.28

-9.84

-8.56
14 FPRWDFRDHP

2.08

-10.6

-8.52
15 FPRWDRRPHP

1.73

-10.21

-8.48
16 FPRWPFRPHP

2.02

-10.49

-8.47
17 FPRWDRRDHP

1.44

-9.66

-8.22
18 FPRWPFRDHP

2.12

-10.11

-7.99
19 FPRWPRWEHP

1.0

-8.82

-7.82
20 FPRWMRREHP

1.54

-8.48

-6.94
21 FFRWPRREHP

1.08

-8.01

-6.93
22 FIRWPRRDHP

1.64

-8.24

-6.6
23 FPRWPRWPHP

1.45

-7.94

-6.49
24 FPRWMRRDHP

2.74

-9.07

-6.33
25 FPRWDFRPHP

2.98

-9.27

-6.29
26 FPRWMRRPHP

1.29

-7.51

-6.22
27 FIRWPRREHP

1.47

-6.87

-5.4
28 FFRWPRRPHP

0.95

-6.28

-5.33
29 FFRWPRRDHP

1.48

-6.29

-4.81
30 FIRWPRRPHP

1.14

-5.68

-4.54

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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