Predicted ligand sequences (modelled structure)


ADAN-name: MYO3_1YP5-29.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala
A
A
 A
A
A
A
A
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.166 ΔGbinding 0.093
TOTAL
 0.259
Backbone Hb 0.000 Cis_bond 0.000
Sidechain Hb 0.000 Torsional clash 0.351
Van der Waals -3.401 Backbone clash 0.007
Electrostatics 0.095 Helix dipole 0.000
Solvation Polar 3.866 Water bridges 0.005
Solvation Hyd -4.373 Disulfide 0.000
VdW clashes 0.501 Electrost. Kon 0.115
Entropy sc 0.337 Part.cov.bonds 0.000
Entropy mc

2.598

 ΔGstability

10.747
       

Predicted ligand sequences for model [MYO3_1YP5-29.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO3_1YP5-29.PDB  

(data)
# Predicted Sequences Value Calculate
1 KRPPRPPWMH 0.0
2 HRPPRPPWMH 0.03
3 KRPPRPPWMR 0.03
4 RRPPRPPWMH 0.03
5 HRPPRPPWMR 0.05
6 RRPPRPPWMR 0.05
7 KRPPRPRWMH 0.09
8 RRPPRPRWMH 0.11
9 KRPPRPRWMR 0.11
10 HRPPRPRWMH 0.12
11 KRPMRPPWMH 0.12
12 KRPPRPEWMH 0.14
13 HRPPRPRWMR 0.14
14 RRPPRPRWMR 0.14
15 RRPMRPPWMH 0.15
16 KRPMRPPWMR 0.15
17 KRPWRPPWMH 0.15
18 HRPMRPPWMH 0.15
19 KRPPRPEWMR 0.16
20 HRPPRPEWMH 0.16
21 RRPPRPEWMH 0.16
22 RRPMRPPWMR 0.17
23 KRPWRPPWMR 0.17
24 RRPWRPPWMH 0.18
25 HRPWRPPWMH 0.18
26 HRPMRPPWMR 0.18
27 HRPPRPEWMR 0.19
28 RRPPRPEWMR 0.19
29 RRPWRPPWMR 0.2
30 HRPWRPPWMR 0.2
31 KRPMRPRWMH 0.21
32 KRPWRPRWMH 0.23
33 KRPMRPRWMR 0.23
34 KRPPRMPWMH 0.24
35 RRPMRPRWMH 0.24
36 HRPMRPRWMH 0.24
37 HRPWRPRWMH 0.26
38 RRPWRPRWMH 0.26
39 RRPMRPRWMR 0.26
40 KRPMRPEWMH 0.26
41 KRPWRPRWMR 0.26
42 HRPMRPRWMR 0.26
43 KRPPRMPWMR 0.27
44 RRPPRMPWMH 0.27
45 HRPPRMPWMH 0.27
46 KRPWRPEWMH 0.28
47 KRPMRPEWMR 0.28
48 HRPWRPRWMR 0.29
49 RRPWRPRWMR 0.29
50 HRPMRPEWMH 0.29
51 KRPPRPPWMK 0.29
52 RRPMRPEWMH 0.29
53 RRPPRMPWMR 0.3
54 HRPPRMPWMR 0.3
55 RRPMRPEWMR 0.31
56 KRPWRPEWMR 0.31
57 HRPWRPEWMH 0.31
58 HRPMRPEWMR 0.31
59 RRPWRPEWMH 0.31
60 HRPPRPPWMK 0.32
61 RRPPRPPWMK 0.32
62 KRPPRMRWMH 0.33
63 RRPWRPEWMR 0.34
64 HRPWRPEWMR 0.34
65 KRPPRMRWMR 0.35
66 KRPMRMPWMH 0.36
67 HRPPRMRWMH 0.36
68 RRPPRMRWMH 0.36
69 HRPPRMRWMR 0.38
70 KRLPRPPWMH 0.38
71 KRPPRMEWMH 0.38
72 RRPPRMRWMR 0.38
73 KRPPRPRWMK 0.38
74 KRPMRMPWMR 0.39
75 HRPMRMPWMH 0.39
76 KRPWRMPWMH 0.39
77 RRPMRMPWMH 0.39
78 HRPPRPRWMK 0.4
79 KRLPRPPWMR 0.4
80 RRLPRPPWMH 0.4
81 HRLPRPPWMH 0.4
82 KRPPRMEWMR 0.4
83 RRPPRPRWMK 0.4
84 KRPMRPPWMK 0.41
85 KRPPRPPRMH 0.41
86 HRPPRMEWMH 0.41
87 RRPPRMEWMH 0.41
88 KRPPRPEWMK 0.42
89 HRPMRMPWMR 0.42
90 KRPWRMPWMR 0.42
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 KRPMRPPWMH

1.45

-13.49

-12.04
2 KRPWRPPWMH

1.26

-12.93

-11.67
3 KRPMRPPWMR

1.66

-13.21

-11.55
4 RRPMRPPWMR

1.31

-12.84

-11.53
5 RRPWRPPWMR

1.2

-12.72

-11.52
6 KRPPRPEWMR

1.46

-12.95

-11.49
7 RRPWRPPWMH

1.41

-12.69

-11.28
8 HRPMRPPWMR

1.3

-12.57

-11.27
9 HRPMRPPWMH

1.33

-12.52

-11.19
10 KRPPRPPWMH

1.45

-12.53

-11.08
11 KRPWRPPWMR

1.57

-12.42

-10.85
12 HRPPRPPWMR

1.56

-12.38

-10.82
13 RRPPRPEWMR

1.29

-11.95

-10.66
14 HRPWRPPWMR

2.0

-12.66

-10.66
15 KRPPRPPWMR

1.22

-11.86

-10.64
16 HRPPRPRWMH

1.73

-12.36

-10.63
17 HRPPRPPWMH

1.2

-11.68

-10.48
18 KRPPRPRWMH

1.49

-11.85

-10.36
19 HRPPRPRWMR

1.41

-11.74

-10.33
20 KRPPRPEWMH

1.19

-11.45

-10.26
21 RRPPRPPWMH

1.44

-11.65

-10.21
22 RRPMRPPWMH

1.12

-11.31

-10.19
23 HRPWRPPWMH

1.05

-11.23

-10.18
24 KRPPRPRWMR

1.45

-11.55

-10.1
25 HRPPRPEWMR

1.24

-11.29

-10.05
26 RRPPRPRWMH

1.89

-11.6

-9.71
27 HRPPRPEWMH

1.31

-10.9

-9.59
28 RRPPRPEWMH

1.48

-10.95

-9.47
29 RRPPRPPWMR

2.51

-11.75

-9.24
30 RRPPRPRWMR

2.3

-11.17

-8.87

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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