Predicted ligand sequences (modelled structure)


ADAN-name: MYO3_1YP5-23.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7
poly-Ala
A
A
A
 A
A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.112 ΔGbinding -0.844
TOTAL
 -0.732
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.637 Torsional clash 0.249
Van der Waals -1.934 Backbone clash 0.002
Electrostatics -0.073 Helix dipole 0.000
Solvation Polar 2.454 Water bridges 0.000
Solvation Hyd -2.505 Disulfide 0.000
VdW clashes 0.054 Electrost. Kon -0.075
Entropy sc 0.518 Part.cov.bonds 0.000
Entropy mc

1.743

 ΔGstability

8.057
       

Predicted ligand sequences for model [MYO3_1YP5-23.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO3_1YP5-23.PDB  

(data)
# Predicted Sequences Value Calculate
1 WPLHPWY 0.0
2 WPLMPWY 0.05
3 WRLHPWY 0.17
4 WPLHPWH 0.17
5 WPLHEWY 0.2
6 WELHPWY 0.21
7 WPLMPWH 0.22
8 WRLMPWY 0.23
9 WPLHKWY 0.25
10 WPLMEWY 0.25
11 WELMPWY 0.26
12 WPLMKWY 0.3
13 WRLHPWH 0.34
14 WPLLPWY 0.34
15 FPLHPWY 0.36
16 WPLHEWH 0.37
17 WPLHPWM 0.37
18 WELHPWH 0.38
19 WRLHEWY 0.38
20 WRLMPWH 0.4
21 FPLMPWY 0.41
22 WELHEWY 0.41
23 WPLMEWH 0.42
24 WPLHKWH 0.42
25 WRLMEWY 0.43
26 WRLHKWY 0.43
27 WPLMPWM 0.43
28 WELMPWH 0.43
29 WELHKWY 0.46
30 WELMEWY 0.47
31 WPLMKWH 0.47
32 WRLMKWY 0.48
33 WRLLPWY 0.51
34 WPLLPWH 0.51
35 WELMKWY 0.52
36 FRLHPWY 0.53
37 FPLHPWH 0.53
38 WPLLEWY 0.54
39 WELLPWY 0.55
40 WRLHPWM 0.55
41 WRLHEWH 0.55
42 FPLHEWY 0.56
43 FELHPWY 0.57
44 FPLMPWH 0.58
45 WELHEWH 0.58
46 WPLHEWM 0.58
47 FRLMPWY 0.58
48 WRLHKWH 0.59
49 WPLLKWY 0.59
50 WELHPWM 0.59
51 WRLMEWH 0.6
52 WRLMPWM 0.6
53 FPLMEWY 0.61
54 FPLHKWY 0.61
55 FELMPWY 0.62
56 WELMEWH 0.63
57 WPLHKWM 0.63
58 WELHKWH 0.63
59 WPLMEWM 0.63
60 WELMPWM 0.64
61 WRLMKWH 0.65
62 FPLMKWY 0.66
63 WRLLPWH 0.68
64 WELMKWH 0.68
65 WPLMKWM 0.68
66 FPLLPWY 0.7
67 FRLHPWH 0.7
68 WPLLPWM 0.71
69 WPLLEWH 0.71
70 WRLLEWY 0.72
71 WELLPWH 0.72
72 FPLHPWM 0.73
73 FPLHEWH 0.73
74 FRLHEWY 0.73
75 FELHPWH 0.74
76 FRLMPWH 0.75
77 WELLEWY 0.75
78 WRLHEWM 0.75
79 WPLLKWH 0.76
80 WRLLKWY 0.77
81 FELHEWY 0.77
82 FRLHKWY 0.78
83 FPLHKWH 0.78
84 FPLMPWM 0.78
85 FPLMEWH 0.78
86 FELMPWH 0.79
87 WELHEWM 0.79
88 FRLMEWY 0.79
89 WRLMEWM 0.8
90 WRLHKWM 0.8
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 WPLMPWM

1.3

-7.73

-6.43
2 WPLMPWY

1.45

-7.76

-6.31
3 WPLMKWY

1.57

-7.77

-6.2
4 FPLMPWY

1.44

-7.55

-6.11
5 WRLMPWY

1.29

-6.71

-5.42
6 WPLMEWH

1.45

-6.85

-5.4
7 WPLMEWY

1.55

-6.88

-5.33
8 WRLMPWH

1.26

-6.59

-5.33
9 WRLMEWY

1.48

-6.73

-5.25
10 WELMPWH

2.01

-7.18

-5.17
11 WELMPWY

1.26

-6.37

-5.11
12 WELMEWY

1.51

-6.41

-4.9
13 WPLMPWH

1.38

-6.07

-4.69
14 FPLHPWY

1.4

-5.99

-4.59
15 WPLHPWY

1.57

-6.15

-4.58
16 WRLHKWY

1.7

-6.2

-4.5
17 WRLHPWY

1.34

-5.64

-4.3
18 WRLHEWY

1.53

-5.62

-4.09
19 WPLHEWH

1.34

-5.05

-3.71
20 WPLHPWM

1.39

-5.03

-3.64
21 WELHPWY

1.39

-5.03

-3.64
22 WELHEWY

1.47

-5.03

-3.56
23 WPLHEWY

1.52

-5.0

-3.48
24 WPLLPWY

2.2

-5.62

-3.42
25 WPLHKWH

1.64

-5.03

-3.39
26 WELHPWH

1.15

-4.46

-3.31
27 WELHKWY

1.72

-4.8

-3.08
28 WRLHPWH

2.06

-4.84

-2.78
29 WPLHKWY

2.05

-4.67

-2.62
30 WPLHPWH

1.08

-3.5

-2.42

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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