Predicted ligand sequences (modelled structure)


ADAN-name: MYO3_1YP5-16.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala A
A
A
A
A
G
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.284 ΔGbinding 3.377
TOTAL
 3.661
Backbone Hb 0.000 Cis_bond 0.000
Sidechain Hb 0.000 Torsional clash 0.321
Van der Waals -3.392 Backbone clash 0.162
Electrostatics 0.304 Helix dipole 0.000
Solvation Polar 4.421 Water bridges 0.000
Solvation Hyd -4.613 Disulfide 0.000
VdW clashes 2.571 Electrost. Kon 0.382
Entropy sc 0.339 Part.cov.bonds 0.000
Entropy mc

3.043

 ΔGstability

13.910
       

Predicted ligand sequences for model [MYO3_1YP5-16.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO3_1YP5-16.PDB  

(data)
# Predicted Sequences Value Calculate
1 YPPIPSRRP 0.0
2 YPPIDSRRP 0.1
3 RPPIPSRRP 0.13
4 YPPIPGRRP 0.14
5 YPPIKSRRP 0.17
6 YPFIPSRRP 0.2
7 FPPIPSRRP 0.23
8 RPPIDSRRP 0.23
9 YPLIPSRRP 0.24
10 YPPIDGRRP 0.24
11 RPPIPGRRP 0.27
12 YPFIDSRRP 0.3
13 RPPIKSRRP 0.3
14 YPPIKGRRP 0.32
15 RPFIPSRRP 0.33
16 FPPIDSRRP 0.33
17 YPFIPGRRP 0.34
18 YPLIDSRRP 0.34
19 RPLIPSRRP 0.36
20 RPPIDGRRP 0.37
21 YPFIKSRRP 0.37
22 FPPIPGRRP 0.37
23 YPLIPGRRP 0.38
24 YPPIPSRRM 0.38
25 FPPIKSRRP 0.4
26 YPLIKSRRP 0.41
27 RPFIDSRRP 0.42
28 FPFIPSRRP 0.43
29 YPFIDGRRP 0.44
30 RPPIKGRRP 0.44
31 RPLIDSRRP 0.46
32 FPLIPSRRP 0.46
33 RPFIPGRRP 0.47
34 FPPIDGRRP 0.47
35 YPPIDSRRM 0.48
36 YPLIDGRRP 0.48
37 RPFIKSRRP 0.5
38 RPLIPGRRP 0.51
39 RPPIPSRRM 0.51
40 YPFIKGRRP 0.52
41 FPFIDSRRP 0.53
42 YPPIPGRRM 0.53
43 RPLIKSRRP 0.53
44 YPPIKSRRM 0.55
45 FPPIKGRRP 0.55
46 YPLIKGRRP 0.55
47 FPLIDSRRP 0.56
48 RPFIDGRRP 0.57
49 FPFIPGRRP 0.57
50 YPFIPSRRM 0.58
51 FPFIKSRRP 0.6
52 RPLIDGRRP 0.61
53 FPLIPGRRP 0.61
54 RPPIDSRRM 0.61
55 FPPIPSRRM 0.61
56 YPLIPSRRM 0.62
57 YPPIDGRRM 0.63
58 RPFIKGRRP 0.64
59 FPLIKSRRP 0.64
60 RPPIPGRRM 0.65
61 FPFIDGRRP 0.67
62 RPPIKSRRM 0.68
63 RPLIKGRRP 0.68
64 YPFIDSRRM 0.68
65 YPPIKGRRM 0.7
66 FPLIDGRRP 0.71
67 FPPIDSRRM 0.71
68 RPFIPSRRM 0.71
69 YPLIDSRRM 0.72
70 YPFIPGRRM 0.73
71 RPLIPSRRM 0.74
72 FPFIKGRRP 0.74
73 RPPIDGRRM 0.75
74 YPFIKSRRM 0.75
75 YPLIPGRRM 0.76
76 FPPIPGRRM 0.76
77 FPPIKSRRM 0.78
78 FPLIKGRRP 0.78
79 YPLIKSRRM 0.79
80 RPFIDSRRM 0.81
81 FPFIPSRRM 0.81
82 RPPIKGRRM 0.82
83 YPFIDGRRM 0.83
84 RPLIDSRRM 0.84
85 FPLIPSRRM 0.85
86 FPPIDGRRM 0.85
87 RPFIPGRRM 0.85
88 YPLIDGRRM 0.86
89 RPFIKSRRM 0.88
90 RPLIPGRRM 0.89
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RPPIDSRRP

2.31

-5.84

-3.53
2 YPFIPGRRP

1.06

-3.63

-2.57
3 RPPIPSRRP

2.39

-4.66

-2.27
4 FPPIPGRRP

1.01

-3.27

-2.26
5 RPPIDGRRP

1.1

-3.3

-2.2
6 YPLIPGRRP

1.3

-3.44

-2.14
7 YPPIPGRRP

0.9

-2.95

-2.05
8 YPFIPSRRP

1.95

-3.95

-2.0
9 RPPIKGRRP

1.69

-3.63

-1.94
10 YPFIDGRRP

1.33

-3.25

-1.92
11 RPPIPGRRP

1.5

-3.3

-1.8
12 YPPIDGRRP

1.15

-2.93

-1.78
13 YPFIDSRRP

2.15

-3.6

-1.45
14 RPPIKSRRP

1.96

-3.3

-1.34
15 FPFIPSRRP

2.13

-3.45

-1.32
16 YPPIDSRRP

2.07

-3.34

-1.27
17 YPLIKSRRP

2.29

-3.55

-1.26
18 YPPIKGRRP

1.7

-2.89

-1.19
19 YPLIDSRRP

2.22

-3.27

-1.05
20 FPPIPSRRP

2.77

-3.73

-0.96
21 YPFIKSRRP

2.07

-3.03

-0.96
22 FPPIKSRRP

2.46

-3.4

-0.94
23 YPLIPSRRP

2.08

-3.0

-0.92
24 RPFIDSRRP

2.21

-3.11

-0.9
25 RPFIPSRRP

2.14

-2.94

-0.8
26 YPPIPSRRP

2.17

-2.95

-0.78
27 YPPIKSRRP

2.63

-3.36

-0.73
28 YPPIPSRRM

2.98

-3.59

-0.61
29 RPLIPSRRP

1.93

-2.27

-0.34
30 FPPIDSRRP

3.24

-3.29

-0.05

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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