Predicted ligand sequences (modelled structure)


ADAN-name: MYO3_1YP5-15.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala A A
A
 A
A
A
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 0.872 ΔGbinding 4.852
TOTAL
 5.724
Backbone Hb -1.525 Cis_bond 0.000
Sidechain Hb -1.525 Torsional clash 0.618
Van der Waals -3.653 Backbone clash 2.282
Electrostatics 0.281 Helix dipole 0.000
Solvation Polar 5.328 Water bridges 0.000
Solvation Hyd -4.604 Disulfide 0.000
VdW clashes 4.780 Electrost. Kon 0.337
Entropy sc 0.817 Part.cov.bonds 0.000
Entropy mc

3.999

 ΔGstability

15.362
       

Predicted ligand sequences for model [MYO3_1YP5-15.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  MYO3_1YP5-15.PDB  

(data)
# Predicted Sequences Value Calculate
1 RPFVIWKTR 0.0
2 RPFVIWKSR 0.0
3 RPWVIWKSR 0.01
4 RPWVIWKTR 0.01
5 RPFMIWKSR 0.01
6 RPFMIWKTR 0.01
7 RPWMIWKTR 0.02
8 RPWMIWKSR 0.02
9 RPYVIWKTR 0.08
10 RPYVIWKSR 0.09
11 RPYMIWKTR 0.1
12 RPYMIWKSR 0.1
13 RPFVIWLTR 0.12
14 RPFVIWRSR 0.12
15 RPWVIWRTR 0.12
16 RPFVIWRTR 0.12
17 RPWVIWRSR 0.12
18 RPWMIWRTR 0.13
19 RPWVIWLTR 0.13
20 RPFVIWLSR 0.13
21 RPFMIWRSR 0.13
22 RPWVIWLSR 0.13
23 RPFMIWRTR 0.13
24 RPWMIWLTR 0.14
25 RPFMIWLTR 0.14
26 RPWMIWLSR 0.14
27 RPWMIWRSR 0.14
28 RPFMIWLSR 0.14
29 RLFVIWKTR 0.15
30 RLFVIWKSR 0.15
31 RPFVKWKTR 0.15
32 RLFMIWKTR 0.16
33 RLWVIWKSR 0.16
34 RPFVIWKIR 0.16
35 RPWVKWKSR 0.16
36 RPWVIWKIR 0.16
37 RPFVKWKSR 0.16
38 RPWVKWKTR 0.16
39 RLWVIWKTR 0.16
40 RPFVVWKSR 0.17
41 RPFMKWKTR 0.17
42 RLWMIWKTR 0.17
43 RKFVIWKTR 0.17
44 RPFVVWKTR 0.17
45 RLFMIWKSR 0.17
46 RPWMIWKIR 0.17
47 RPWMKWKSR 0.17
48 RLWMIWKSR 0.17
49 RKFVIWKSR 0.17
50 RPFMKWKSR 0.17
51 RPWMKWKTR 0.17
52 RPFMIWKIR 0.17
53 RKWVIWKTR 0.18
54 RPWVVWKTR 0.18
55 RPWVVWKSR 0.18
56 RKWVIWKSR 0.18
57 RKFMIWKTR 0.18
58 RPFMVWKTR 0.18
59 RKWMIWKTR 0.19
60 RPWMVWKTR 0.19
61 RKFMIWKSR 0.19
62 RKWMIWKSR 0.19
63 RPFMVWKSR 0.19
64 RPWMVWKSR 0.19
65 RPYVIWRSR 0.2
66 RPYVIWRTR 0.2
67 RPYVIWLSR 0.21
68 HPFVIWKTR 0.21
69 RPYMIWRTR 0.21
70 RPYVIWLTR 0.21
71 HPWVIWKTR 0.21
72 HPFVIWKSR 0.21
73 HPFMIWKTR 0.22
74 HPFMIWKSR 0.22
75 RPYMIWLTR 0.22
76 HPWVIWKSR 0.22
77 RPYMIWRSR 0.22
78 RPYMIWLSR 0.22
79 YPWVIWKSR 0.23
80 YPFVIWKTR 0.23
81 HPWMIWKTR 0.23
82 YPWVIWKTR 0.23
83 RLYVIWKTR 0.23
84 HPWMIWKSR 0.23
85 YPFVIWKSR 0.23
86 RPYVKWKTR 0.24
87 RLYVIWKSR 0.24
88 YPFMIWKTR 0.24
89 RPYVIWKIR 0.24
90 YPFMIWKSR 0.24
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 RPFVIWLTR

1.01

-7.13

-6.12
2 RPWVIWLTR

1.77

-7.62

-5.85
3 RPYVIWKSR

1.26

-6.25

-4.99
4 RPFVIWKTR

0.91

-5.48

-4.57
5 RPFMIWKSR

0.87

-5.24

-4.37
6 RPFVIWLSR

1.08

-5.27

-4.19
7 RPFVIWRTR

1.01

-4.96

-3.95
8 RLFVIWKTR

1.18

-5.02

-3.84
9 RPWVIWKTR

1.85

-5.55

-3.7
10 RPFVIWRSR

1.72

-5.41

-3.69
11 RPWMIWKTR

2.0

-5.59

-3.59
12 RPWVIWLSR

1.76

-5.33

-3.57
13 RPFVIWKSR

1.0

-4.53

-3.53
14 RPWVIWKSR

1.74

-5.26

-3.52
15 RPWVIWRTR

1.97

-5.26

-3.29
16 RPYVIWKTR

2.02

-5.31

-3.29
17 RLFVIWKSR

1.4

-4.54

-3.14
18 RPFMIWRSR

2.13

-5.23

-3.1
19 RPWMIWLSR

2.02

-4.51

-2.49
20 RPWMIWRSR

2.08

-4.53

-2.45
21 RPWVIWRSR

1.81

-4.24

-2.43
22 RPFMIWKTR

2.04

-3.84

-1.8
23 RPFMIWRTR

2.32

-4.1

-1.78
24 RPWMIWRTR

2.18

-3.94

-1.76
25 RPFMIWLSR

2.24

-3.83

-1.59
26 RPFMIWLTR

2.18

-3.74

-1.56
27 RPWMIWLTR

2.29

-3.59

-1.3
28 RPWMIWKSR

2.24

-3.4

-1.16
29 RPYMIWKTR

2.47

-3.61

-1.14
30 RPYMIWKSR

2.2

-3.31

-1.11

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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