Predicted ligand sequences (modelled structure)


ADAN-name: BZZ1-D2_G2B-ABO-16.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9
poly-Ala A A
A
A
A
G
A
A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 1.769 ΔGbinding 0.834
TOTAL
 2.603
Backbone Hb -0.637 Cis_bond 0.000
Sidechain Hb -0.638 Torsional clash 0.314
Van der Waals -4.000 Backbone clash 0.267
Electrostatics 0.916 Helix dipole 0.000
Solvation Polar 4.565 Water bridges -0.000
Solvation Hyd -5.670 Disulfide 0.000
VdW clashes 1.314 Electrost. Kon 0.726
Entropy sc 0.734 Part.cov.bonds 0.000
Entropy mc

3.210

 ΔGstability

50.463
       

Predicted ligand sequences for model [BZZ1-D2_G2B-ABO-16.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  BZZ1-D2_G2B-ABO-16.PDB  

(data)
# Predicted Sequences Value Calculate
1 WPPLRSRYW 0.0
2 WPPLPSRYW 0.1
3 MPPLRSRYW 0.14
4 WPPIRSRYW 0.16
5 FPPLRSRYW 0.18
6 WPFLRSRYW 0.21
7 WPPLRSRYF 0.23
8 MPPLPSRYW 0.24
9 WPSLRSRYW 0.25
10 WPPIPSRYW 0.26
11 WPPLRGRYW 0.27
12 FPPLPSRYW 0.28
13 WPPLKSRYW 0.3
14 MPPIRSRYW 0.3
15 WPFLPSRYW 0.31
16 WPPLPSRYF 0.33
17 WPSLPSRYW 0.35
18 FPPIRSRYW 0.35
19 MPFLRSRYW 0.35
20 WFPLRSRYW 0.37
21 WPPLPGRYW 0.37
22 MPPLRSRYF 0.38
23 WPFIRSRYW 0.38
24 MPSLRSRYW 0.4
25 MPPIPSRYW 0.4
26 WPPIRSRYF 0.4
27 FPFLRSRYW 0.4
28 MPPLRGRYW 0.41
29 FPPLRSRYF 0.42
30 WPSIRSRYW 0.42
31 WRPLRSRYW 0.43
32 WPPIRGRYW 0.44
33 FPSLRSRYW 0.44
34 MPPLKSRYW 0.44
35 FPPIPSRYW 0.45
36 WPFLRSRYF 0.45
37 MPFLPSRYW 0.45
38 FPPLRGRYW 0.46
39 WPPIKSRYW 0.46
40 WPFIPSRYW 0.47
41 MPPLPSRYF 0.47
42 WFPLPSRYW 0.47
43 WPFLRGRYW 0.48
44 FPPLKSRYW 0.48
45 FPFLPSRYW 0.49
46 MPSLPSRYW 0.49
47 WPSLRSRYF 0.49
48 WPPIPSRYF 0.5
49 WPPLRGRYF 0.51
50 WPFLKSRYW 0.51
51 MFPLRSRYW 0.51
52 MPPLPGRYW 0.51
53 FPPLPSRYF 0.52
54 WPSIPSRYW 0.52
55 MPFIRSRYW 0.52
56 WPPLKSRYF 0.53
57 WPSLRGRYW 0.53
58 WFPIRSRYW 0.53
59 WRPLPSRYW 0.53
60 WPPIPGRYW 0.53
61 FPSLPSRYW 0.54
62 WPFLPSRYF 0.54
63 MPPIRSRYF 0.54
64 WPSLKSRYW 0.55
65 FPPLPGRYW 0.55
66 FFPLRSRYW 0.55
67 FPFIRSRYW 0.56
68 MPSIRSRYW 0.56
69 MRPLRSRYW 0.57
70 WPPLKGRYW 0.57
71 WFFLRSRYW 0.58
72 FPPIRSRYF 0.58
73 WPFLPGRYW 0.58
74 MPPIRGRYW 0.58
75 WPSLPSRYF 0.59
76 MPFLRSRYF 0.59
77 WPPLPGRYF 0.6
78 MPPIKSRYW 0.6
79 WRPIRSRYW 0.6
80 WFPLRSRYF 0.6
81 FPSIRSRYW 0.6
82 MPFIPSRYW 0.61
83 WPFIRSRYF 0.61
84 MFPLPSRYW 0.61
85 MPFLRGRYW 0.62
86 FPPIRGRYW 0.62
87 WPSLPGRYW 0.62
88 WFSLRSRYW 0.62
89 FRPLRSRYW 0.62
90 MPSLRSRYF 0.63
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

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# Precalculated Models Intraclash ΔGbinding Total
1 MPPLRGRYW

3.27

-5.76

-2.49
2 WPPLRGRYW

3.2

-4.98

-1.78
3 FPPLPSRYW

4.1

-5.06

-0.96
4 WPSLRSRYW

4.31

-5.22

-0.91
5 WPFLRSRYW

4.3

-5.18

-0.88
6 MPPLRSRYW

4.64

-5.37

-0.73
7 MPFLRSRYW

4.69

-5.37

-0.68
8 FPFLRSRYW

4.39

-4.98

-0.59
9 WPPLPGRYW

3.54

-3.98

-0.44
10 WPPIRSRYW

4.45

-4.73

-0.28
11 WPFIRSRYW

4.28

-4.53

-0.25
12 FPPLRSRYF

5.27

-5.45

-0.18
13 MPPLRSRYF

5.58

-5.68

-0.1
14 MPSLRSRYW

5.64

-5.71

-0.07
15 WPPLRSRYW

5.6

-5.43

0.17
16 MPPIRSRYW

5.41

-5.15

0.26
17 WPFLPSRYW

5.26

-4.93

0.33
18 WPPLRSRYF

5.55

-5.18

0.37
19 FPPIRSRYW

5.61

-5.19

0.42
20 FPPLRSRYW

4.57

-3.89

0.68
21 WPPIPSRYW

5.21

-4.45

0.76
22 WPSLPSRYW

5.16

-4.35

0.81
23 MPPLPSRYW

5.5

-4.48

1.02
24 WPSIRSRYW

5.32

-4.13

1.19
25 WPPLKSRYW

5.64

-4.41

1.23
26 WPPIRSRYF

6.11

-4.84

1.27
27 MPPIPSRYW

5.09

-3.61

1.48
28 WPPLPSRYF

5.4

-3.85

1.55
29 WPPLPSRYW

5.3

-3.6

1.7
30 WFPLRSRYW

5.95

-2.39

3.56

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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