Predicted ligand sequences (modelled structure)


ADAN-name: BZZ1-D1_1ZUU-3.PDB (view again the scoring matrix)

Starting poly-Ala ligand sequence and binding properties                 (Help)

position 1 2 3 4 5 6 7 8 9 10
poly-Ala A
A
 A A
A
A
A
 A A
A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

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Intraclash 7.071 ΔGbinding 2.432
TOTAL
 9.503
Backbone Hb -0.638 Cis_bond 0.000
Sidechain Hb -0.638 Torsional clash 2.707
Van der Waals -5.451 Backbone clash 0.170
Electrostatics -0.428 Helix dipole 0.000
Solvation Polar 6.238 Water bridges 0.000
Solvation Hyd -7.650 Disulfide 0.000
VdW clashes 4.535 Electrost. Kon -0.538
Entropy sc 0.798 Part.cov.bonds 0.000
Entropy mc

3.497

 ΔGstability

24.689
       

Predicted ligand sequences for model [BZZ1-D1_1ZUU-3.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  BZZ1-D1_1ZUU-3.PDB  

(data)
# Predicted Sequences Value Calculate
1 WHMKFPPPRF 0.0
2 WHMKFPPPDF 0.04
3 WHMKFPPPKF 0.07
4 WHMKYPPPRF 0.07
5 WHMKFPPDRF 0.07
6 WHMKRPPPRF 0.07
7 WHGKFPPPRF 0.09
8 WHKKFPPPRF 0.1
9 WHMKFPPDDF 0.11
10 WHMKYPPPDF 0.11
11 WHMKRPPPDF 0.11
12 WHGKFPPPDF 0.12
13 WHKKFPPPDF 0.14
14 WHMKRPPDRF 0.14
15 WHMKYPPPKF 0.15
16 WHMKRPPPKF 0.15
17 WHMKFPPDKF 0.15
18 WHMKYPPDRF 0.15
19 WHGKFPPDRF 0.16
20 WHGKFPPPKF 0.16
21 WHGKYPPPRF 0.16
22 WHGKRPPPRF 0.16
23 WHKKFPPDRF 0.17
24 WHKKRPPPRF 0.17
25 WHKKYPPPRF 0.18
26 WHKKFPPPKF 0.18
27 WHMKRPPDDF 0.18
28 WHMKYPPDDF 0.19
29 WHGKFPPDDF 0.2
30 WHGKRPPPDF 0.2
31 WHGKYPPPDF 0.2
32 WHKKFPPDDF 0.21
33 WHKKRPPPDF 0.21
34 WHMKRPPDKF 0.22
35 WHKKYPPPDF 0.22
36 WHMKYPPDKF 0.22
37 WHGKRPPDRF 0.23
38 WHGKFPPDKF 0.23
39 WHGKYPPDRF 0.23
40 WHGKRPPPKF 0.23
41 WHGKYPPPKF 0.23
42 WHKKYPPDRF 0.25
43 WHKKRPPPKF 0.25
44 WHKKYPPPKF 0.25
45 WHKKRPPDRF 0.25
46 WHKKFPPDKF 0.25
47 WHGKRPPDDF 0.27
48 WHGKYPPDDF 0.27
49 WHKKYPPDDF 0.29
50 WHKKRPPDDF 0.29
51 WHGKYPPDKF 0.3
52 WHGKRPPDKF 0.3
53 WHMRFPPPRF 0.31
54 WHKKRPPDKF 0.32
55 WHKKYPPDKF 0.32
56 WHMKFPKPRF 0.33
57 WHMRFPPPDF 0.35
58 WHMKFPPPRR 0.35
59 WHMKFPKPDF 0.36
60 WHMRRPPPRF 0.38
61 WHMRFPPDRF 0.38
62 RHMKFPPPRF 0.39
63 WHMRFPPPKF 0.39
64 WHMKFPPPDR 0.39
65 WHMRYPPPRF 0.39
66 WHMKFPKPKF 0.4
67 WHMKYPKPRF 0.4
68 WHMKRPKPRF 0.4
69 WHGRFPPPRF 0.4
70 WHMKFPKDRF 0.4
71 WHMGFPPPRF 0.41
72 WHGKFPKPRF 0.41
73 WHKRFPPPRF 0.41
74 YHMKFPPPRF 0.42
75 WHMRYPPPDF 0.42
76 WHMRFPPDDF 0.42
77 WHMKFPPDRR 0.42
78 WHMRRPPPDF 0.42
79 WHMKFPPPKR 0.43
80 WHKKFPKPRF 0.43
81 WHMKYPPPRR 0.43
82 WHMKRPPPRR 0.43
83 RHMKFPPPDF 0.43
84 WHMKRPKPDF 0.44
85 WHMKYPKPDF 0.44
86 WHGRFPPPDF 0.44
87 WHMKFPKDDF 0.44
88 WHGKFPPPRR 0.44
89 WHGKFPKPDF 0.45
90 WHKKFPPPRR 0.45
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 WHMKFPPDDF

6.82

-11.5

-4.68
2 WHGKRPPPDF

5.66

-10.29

-4.63
3 WHKKFPPPKF

6.07

-10.64

-4.57
4 WHMKFPPPKF

6.85

-11.23

-4.38
5 WHKKFPPPRF

7.08

-11.44

-4.36
6 WHMKRPPPKF

7.35

-11.66

-4.31
7 WHKKFPPPDF

6.67

-10.94

-4.27
8 WHMKYPPDDF

7.41

-11.67

-4.26
9 WHMKRPPDRF

6.97

-11.17

-4.2
10 WHMKFPPPDF

6.7

-10.72

-4.02
11 WHKKFPPDRF

6.73

-10.74

-4.01
12 WHGKRPPPRF

6.96

-10.92

-3.96
13 WHGKFPPDRF

6.29

-10.2

-3.91
14 WHKKRPPPRF

6.82

-10.67

-3.85
15 WHMKRPPPDF

7.73

-11.54

-3.81
16 WHGKFPPPKF

6.71

-10.4

-3.69
17 WHMKYPPDRF

7.24

-10.87

-3.63
18 WHMKYPPPDF

7.43

-11.05

-3.62
19 WHMKFPPPRF

7.13

-10.62

-3.49
20 WHMKYPPPKF

7.21

-10.69

-3.48
21 WHMKRPPDDF

6.86

-10.32

-3.46
22 WHGKYPPPRF

6.5

-9.95

-3.45
23 WHMKRPPPRF

7.83

-11.21

-3.38
24 WHGKFPPPRF

6.1

-9.48

-3.38
25 WHKKYPPPRF

7.8

-11.04

-3.24
26 WHGKFPPPDF

6.5

-9.73

-3.23
27 WHGKFPPDDF

6.2

-9.42

-3.22
28 WHMKYPPPRF

7.25

-10.28

-3.03
29 WHMKFPPDRF

7.78

-10.64

-2.86
30 WHMKFPPDKF

7.43

-10.17

-2.74

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

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