Predicted ligand sequences


ADAN-name: 1SVE2.PDB (view again the scoring matrix)

PDB name: [1SVE.PDB]

Wild-type ligand sequence and binding properties                 (Help)

WT T T Y A D F I A S G R T G R R N A I H
position 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
poly-Ala
A
A
 A
A
 A
A
 A
A
 A G
A
A
 G
A
A
A
A
A
 A

Grey: Restrictive positions; only 1 or 2 residues predicted after FoldX analysis

Yellow: Tolerant positions; more than 10 residues predicted after FoldX analysis

 

WT ligand    

(Help)

Intraclash 8.492 ΔGbinding -29.435
TOTAL
 -20.943
Backbone Hb -4.825 Cis_bond 0.000
Sidechain Hb -9.812 Torsional clash 0.992
Van der Waals -17.442 Backbone clash 0.409
Electrostatics -12.461 Helix dipole 0.150
Solvation Polar 27.021 Water bridges -0.026
Solvation Hyd -21.024 Disulfide 0.000
VdW clashes 0.536 Electrost. Kon -4.775
Entropy sc 7.310 Part.cov.bonds 0.000
Entropy mc

4.921

 ΔGstability

-42.565
       

Predicted ligand sequences for template [1SVE2.PDB]

(from FoldX scoring matrices).
If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence).
 
  1SVE2.PDB  

(data)
# Predicted Sequences Value Calculate
1 WRFRRFYKCFRRKRRRWFF 0.0
2 WRFRMFYKCFRRKRRRWFF 0.02
3 WRFDRFYKCFRRKRRRWFF 0.02
4 WRFHRFYKCFRRKRRRWFF 0.02
5 WRFDMFYKCFRRKRRRWFF 0.04
6 WRFHMFYKCFRRKRRRWFF 0.04
7 WRFRRFYKCRRRKRRRWFF 0.04
8 WRFDRFYKCRRRKRRRWFF 0.06
9 WRFRMFYKCRRRKRRRWFF 0.06
10 WRFHRFYKCRRRKRRRWFF 0.06
11 WRFRRFYKCFRRKRRRWFY 0.07
12 WRFRRFYKCFRRKRRRWFW 0.08
13 WRFHMFYKCRRRKRRRWFF 0.08
14 WRFDMFYKCRRRKRRRWFF 0.08
15 TRFRRFYKCFRRKRRRWFF 0.09
16 WRFRMFYKCFRRKRRRWFY 0.09
17 WRFHRFYKCFRRKRRRWFY 0.09
18 WRFDRFYKCFRRKRRRWFY 0.09
19 WRFRMFYKCFRRKRRRWFW 0.1
20 WRFDRFYKCFRRKRRRWFW 0.1
21 WRFHRFYKCFRRKRRRWFW 0.1
22 TRFHRFYKCFRRKRRRWFF 0.11
23 TRFDRFYKCFRRKRRRWFF 0.11
24 WRFDMFYKCFRRKRRRWFY 0.11
25 WRFHMFYKCFRRKRRRWFY 0.11
26 WRFRRFYKCRRRKRRRWFY 0.11
27 yRFRRFYKCFRRKRRRWFF 0.11
28 TRFRMFYKCFRRKRRRWFF 0.11
29 WRFDMFYKCFRRKRRRWFW 0.12
30 WRFHMFYKCFRRKRRRWFW 0.12
31 yRFRMFYKCFRRKRRRWFF 0.12
32 WRFRRFYRCFRRKRRRWFF 0.12
33 yRFDRFYKCFRRKRRRWFF 0.12
34 yRFHRFYKCFRRKRRRWFF 0.12
35 WRFDRFYKCRRRKRRRWFY 0.13
36 WRFRMFYKCRRRKRRRWFY 0.13
37 WRFRRFYKCRRRKRRRWFW 0.13
38 TRFDMFYKCFRRKRRRWFF 0.13
39 WRFHRFYKCRRRKRRRWFY 0.13
40 WRFRRFYHCFRRKRRRWFF 0.13
41 TRFHMFYKCFRRKRRRWFF 0.13
42 TRFRRFYKCRRRKRRRWFF 0.13
43 WRFRMFYRCFRRKRRRWFF 0.14
44 yRFDMFYKCFRRKRRRWFF 0.14
45 WRFDRFYKCRRRKRRRWFW 0.14
46 WRFRMFYKCRRRKRRRWFW 0.14
47 WRFHRFYKCRRRKRRRWFW 0.14
48 yRFHMFYKCFRRKRRRWFF 0.14
49 WRFHRFYRCFRRKRRRWFF 0.14
50 WRFDRFYRCFRRKRRRWFF 0.14
51 TRFHRFYKCRRRKRRRWFF 0.15
52 WRFRMFYHCFRRKRRRWFF 0.15
53 WRFRRFYKMFRRKRRRWFF 0.15
54 TRFDRFYKCRRRKRRRWFF 0.15
55 WRFHMFYKCRRRKRRRWFY 0.15
56 WRFHRFYHCFRRKRRRWFF 0.15
57 WRFDRFYHCFRRKRRRWFF 0.15
58 TRFRMFYKCRRRKRRRWFF 0.15
59 yRFRRFYKCRRRKRRRWFF 0.15
60 WRFDMFYKCRRRKRRRWFY 0.15
61 WRFRMFYKMFRRKRRRWFF 0.16
62 WRFDRFYKMFRRKRRRWFF 0.16
63 TRFRRFYKCFRRKRRRWFY 0.16
64 WRFHMFYKCRRRKRRRWFW 0.16
65 WRFRRFYRCRRRKRRRWFF 0.16
66 WRFHMFYRCFRRKRRRWFF 0.16
67 WRFHRFYKMFRRKRRRWFF 0.16
68 WRFDMFYKCRRRKRRRWFW 0.16
69 WRFDMFYRCFRRKRRRWFF 0.16
70 WRFHMFYHCFRRKRRRWFF 0.17
71 yRFHRFYKCRRRKRRRWFF 0.17
72 TRFRRFYKCFRRKRRRWFW 0.17
73 WRFRRFYHCRRRKRRRWFF 0.17
74 TRFHMFYKCRRRKRRRWFF 0.17
75 TRFDMFYKCRRRKRRRWFF 0.17
76 yRFDRFYKCRRRKRRRWFF 0.17
77 yRFRMFYKCRRRKRRRWFF 0.17
78 WRFDMFYHCFRRKRRRWFF 0.17
79 WRFDMFYKMFRRKRRRWFF 0.18
80 TRFHRFYKCFRRKRRRWFY 0.18
81 WRFHMFYKMFRRKRRRWFF 0.18
82 WRFRMFYRCRRRKRRRWFF 0.18
83 WRFDRFYRCRRRKRRRWFF 0.18
84 TRFDRFYKCFRRKRRRWFY 0.18
85 WRFHRFYRCRRRKRRRWFF 0.18
86 yRFRRFYKCFRRKRRRWFY 0.18
87 yRFHMFYKCRRRKRRRWFF 0.18
88 WRFRRFYKCHRRKRRRWFF 0.18
89 yRFDMFYKCRRRKRRRWFF 0.18
90 TRFRMFYKCFRRKRRRWFY 0.18
  (binding_energy)(dif)  (stability_energy)(dif)

(data)

  

(Help)
# Precalculated Models Intraclash ΔGbinding Total
1 WRFDRFYKCFRRKRRRWFF

7.94

-41.97

-34.03
2 WRFHRFYKCFRRKRRRWFF

8.16

-41.95

-33.79
3 WRFRRFYKCFRRKRRRWFF

7.73

-41.36

-33.63
4 WRFHMFYKCFRRKRRRWFF

7.77

-41.23

-33.46
5 WRFRRFYKCFRRKRRRWFW

7.97

-41.39

-33.42
6 WRFHRFYKCRRRKRRRWFF

7.81

-40.82

-33.01
7 WRFRMFYKCFRRKRRRWFY

7.35

-40.01

-32.66
8 WRFRMFYKCFRRKRRRWFF

8.04

-40.64

-32.6
9 TRFRMFYKCFRRKRRRWFF

7.77

-40.2

-32.43
10 WRFRMFYKCRRRKRRRWFF

8.12

-40.32

-32.2
11 TRFRRFYKCFRRKRRRWFF

8.66

-40.69

-32.03
12 WRFRRFYKCRRRKRRRWFF

7.64

-39.36

-31.72
13 WRFHMFYKCFRRKRRRWFY

8.91

-40.33

-31.42
14 WRFRMFYKCFRRKRRRWFW

8.26

-39.51

-31.25
15 yRFRRFYKCFRRKRRRWFF

9.09

-40.22

-31.13
16 TRFHRFYKCFRRKRRRWFF

7.28

-37.91

-30.63
17 WRFDRFYKCRRRKRRRWFF

8.01

-38.46

-30.45
18 TRFDRFYKCFRRKRRRWFF

7.74

-37.91

-30.17
19 WRFDRFYKCFRRKRRRWFW

8.92

-39.08

-30.16
20 WRFHRFYKCFRRKRRRWFW

7.85

-37.93

-30.08
21 WRFHMFYKCRRRKRRRWFF

7.9

-37.83

-29.93
22 WRFDMFYKCFRRKRRRWFY

9.0

-38.81

-29.81
23 WRFHRFYKCFRRKRRRWFY

8.48

-38.24

-29.76
24 WRFRRFYKCRRRKRRRWFY

9.14

-38.9

-29.76
25 WRFDMFYKCRRRKRRRWFF

8.25

-37.71

-29.46
26 WRFHMFYKCFRRKRRRWFW

8.87

-38.31

-29.44
27 WRFDRFYKCFRRKRRRWFY

8.95

-38.23

-29.28
28 WRFDMFYKCFRRKRRRWFF

7.56

-36.76

-29.2
29 WRFDMFYKCFRRKRRRWFW

8.58

-37.43

-28.85
30 WRFRRFYKCFRRKRRRWFY

8.41

-36.54

-28.13

 NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

NOTE: No more than 10 sequences can be selected for new calculations.

If your favourite sequence is not included in this list, please visit the ADAN section Prediction from a query sequence.

  Comments or questions on the site? Send a mail to adandatabase@umh.es                                                             DISCLAIMER